Protein

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Genbank accession
YP_003359123.1 [GenBank]
Protein name
minor tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,76
Protein sequence
MRGKMFMGTRGYERWVPACAISPDFSRSGFSNAGETIGGGYTIERSKMKSNGYAMTWNNKTQDDMRFLTDLDEGMYDSHDGKNFIYFLDPMQMDKNLAPKMWSAFAIASEDGMPLIHGQRPRAVPTPPNQFGYPARSAVYRSVGASEKMYLPIPPGYVAWFGVHGAADGSAGIRMTPFKGADPGPYSDLKMLSVQTDELVNQGVSSTQGYTGFELSLKDTGSLANLSPNPSAEASLEGWGTVAVGAAGGASALQRGVNGKVGVSSVLQVYSTAPTAAGGGVTHDVPVVPGHVYSYAAYVRTSHATRVSTYLRFYNTAGEPVGGIVNGAVVGTVASPGWSTTPRLANTNATAPAGAAFARIAFGTTAGTGYNNLPAGGWMNVDAIQVNEGNTVSAYGDGDMEGWEWTNGKGISPSRKKPDMITLTGLVIQILPVGAIPKRGPYISGQGSSGCQIESITMSPYNKMLNMVGVTMKLKETEPWE
Physico‐chemical
properties
protein length:481 AA
molecular weight: 50879,77150 Da
isoelectric point:7,02117
aromaticity:0,09356
hydropathy:-0,23992

Domains

Domains [InterPro]
DC_1862
STR
157–464
DC_1862
G3DSA:2.60.120.260
STR
222–388
G3DSA:2.60.120.260
YP_003359123.1
1 481
Architecture
STR
STR 157-464 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003359123.1
1 481
Domain Start End Length (AA) Confidence
N-terminal 1 127 127 0,4438
Central domain 128 326 200 0,4083
C-terminal 327 481 154 0,7163
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-127
Central
128-326
C-terminal
327-481

Taxonomy

  Name Taxonomy ID Lineage
Phage Clavibacter phage CMP1
[NCBI] 		686439 No lineage information
Host Clavibacter michiganensis subsp. michiganensis
[NCBI] 		33013 Bacteria > Actinobacteria > Actinobacteria > Micrococcales > Microbacteriaceae > Clavibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003359123.1 [NCBI]
Genbank nucleotide accession
NC_013698 [NCBI]
CDS location
range 29883 -> 31328
strand +
CDS
ATGCGCGGAAAGATGTTCATGGGGACCCGGGGCTACGAGCGCTGGGTCCCCGCGTGCGCGATTTCCCCTGACTTCAGTCGGTCGGGATTCAGCAACGCCGGGGAAACCATCGGTGGCGGATATACCATCGAACGTAGCAAGATGAAGTCCAACGGATATGCAATGACCTGGAACAATAAGACCCAGGATGACATGCGCTTTTTGACGGATCTTGACGAGGGAATGTACGACTCCCACGACGGCAAAAACTTTATCTACTTCCTTGACCCTATGCAAATGGATAAGAACCTTGCACCGAAGATGTGGTCAGCGTTTGCGATTGCGTCCGAAGATGGAATGCCGCTGATTCATGGGCAGCGGCCACGAGCTGTGCCTACACCGCCTAATCAGTTTGGGTATCCTGCACGCTCTGCCGTATACCGATCCGTTGGCGCATCCGAAAAAATGTACTTGCCAATTCCACCTGGATACGTTGCGTGGTTTGGTGTTCACGGTGCGGCTGACGGTAGCGCCGGAATTCGCATGACTCCCTTTAAGGGTGCGGATCCCGGGCCATATTCGGATTTGAAAATGCTGTCCGTTCAGACGGACGAGCTGGTGAATCAGGGCGTCAGCTCGACGCAGGGCTACACCGGATTCGAGCTGTCCCTGAAGGACACCGGCTCCCTGGCGAACCTGAGCCCCAACCCCTCCGCGGAGGCCAGCCTAGAGGGCTGGGGGACCGTCGCCGTCGGGGCCGCTGGCGGGGCGTCAGCGCTACAGCGCGGGGTCAACGGCAAGGTCGGGGTCAGCAGCGTCCTACAGGTCTACAGCACCGCGCCCACGGCGGCCGGGGGTGGCGTGACTCACGACGTGCCGGTGGTCCCGGGCCACGTCTACAGCTACGCGGCATACGTCCGCACGAGCCACGCCACGCGAGTCTCGACCTACCTCCGCTTCTACAACACGGCGGGCGAGCCGGTCGGCGGAATTGTGAATGGCGCTGTCGTAGGCACAGTGGCGTCGCCGGGCTGGTCAACTACTCCTCGACTCGCAAATACGAATGCAACCGCTCCCGCCGGTGCTGCGTTTGCTCGAATTGCATTCGGTACTACGGCTGGTACTGGATACAATAACTTGCCCGCTGGTGGATGGATGAACGTAGATGCAATTCAGGTCAACGAGGGAAACACGGTAAGCGCATACGGCGACGGTGACATGGAAGGCTGGGAGTGGACGAACGGCAAGGGAATTTCGCCTTCTCGCAAAAAGCCTGACATGATTACGCTGACCGGTTTAGTGATTCAGATTCTACCCGTGGGTGCTATTCCGAAGCGTGGTCCTTACATCTCTGGACAGGGATCGAGCGGGTGTCAGATTGAGTCTATTACCATGAGCCCCTATAACAAAATGCTCAACATGGTTGGCGTGACGATGAAGCTTAAGGAAACTGAGCCGTGGGAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
daaba986680dc2e5153ddaabb2a139be957adf340386a78206e56dfd9b91a1ae
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5852
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50