Protein

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Genbank accession
XWX31072.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MVVRFQSSMGRSLKRVDSDDLNVKGLVLATVSKINYQYQSVEVKVNNLTLGRHIGDDGSLSVPYPKSFIGRTPEGSVFGTKPLITEGSVVLIGFLNDDINSPIILNVYGDNEQNKMINTNPLEGGKFDTDDIYKYSSAIYEILPSLNYKYEDGEGTSIKTFNGKSFFSMTSGEEEKPQASDFYTGTEYQDLFTSYYGNKTLIEPRIQKAPNMLFKHQGVFYDDGTPDNHITTLFLSERGDIRTSVLNTETQQRTTQEMSSDGSYRVIKQDDDLMLDEAQVWVEYGISEDNKFYIKNDKHKFEFTDDGIYIDEKPMLENLGDSIEESMRNLEEIQKELEDINYLLEGVGKDNLEELIASTKESIEASNQATKDVQTLGTNISAVSSRTEGIITQFQDFRDRTFKDFYDEVNEYLAGEHGSVETIVNTDLPAIRNTEQKYRHTTFRDIKIHADLPFKFQDYDSIVANDNVTYYFPQGIAINNGQTYIIHSAPESGTKRLIVIYDEFYKYVNMFYAGTTGGEGLHVETEGTKTYLYARTSNNNIGKFDVTNSRNIEEKSTLQPVEEYNINAYMNFFRTESGWGVEYNNQTKGVFLQRDTVVFFNKDFSKKTGYLWINPSNSTLWSSNLLGGVTNHSAKKQGMTLINNTIIQTLGGNWNPTRDKEPHTYHLQGVQEISPSGDIMNDYTYHPYELRDYLTKQGKVVDMIEHEGAFSYNNRLFSIIVYKSRTKSDANKQGVLIVEYKPKEKEYTFNKTGEPFLAPTANYNPYKTNIDGKLYNEYTGEEITNIKDLIRYMVSTYQSNIVFYSSKVSMLDYDEVAIPGGLRVEVENLNNYTFHLLYRGNATNEVYIINYTASTDSFNITSQDSDNKYDKLDLSTIKYKMTGYVTNATNTPTSTRHGYIDSRRYGSNSKLFFSPYNSYETYMNLNLGGVWQGWEKTGSNTDNNNPVVVSKEEPAEAVIWFEVTD
Physico‐chemical
properties
protein length:965 AA
molecular weight: 110150,69540 Da
isoelectric point:4,89704
aromaticity:0,12021
hydropathy:-0,64031

Domains

Domains [InterPro]
DC_0539
STR
249–960
DC_0539
Coil
Unmapped
316–343
Coil Coil
XWX31072.1
1 965
Architecture
STR
STR 249-960 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX31072.1
1 965
Domain Start End Length (AA) Confidence
N-terminal 1 442 442 0,7680
Central domain 443 664 223 0,7338
C-terminal 665 965 300 0,5596
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-442
Central
443-664
C-terminal
665-965

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_19
[NCBI] 		2815618 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mammaliicoccus vitulinus
[NCBI] 		71237 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX31072.1 [NCBI]
Genbank nucleotide accession
MZ417322 [NCBI]
CDS location
range 23964 -> 26861
strand +
CDS
ATGGTAGTAAGATTCCAATCTTCCATGGGAAGAAGTTTAAAAAGAGTAGATTCAGATGACTTAAATGTAAAAGGGTTAGTTTTAGCTACAGTAAGTAAAATAAATTATCAGTATCAGTCAGTAGAAGTTAAAGTTAATAATTTGACACTAGGAAGACATATAGGTGATGATGGTAGTTTATCTGTACCTTATCCTAAATCCTTTATTGGTAGAACACCTGAAGGTAGTGTATTTGGAACAAAACCTTTAATTACTGAAGGTTCCGTAGTATTAATTGGGTTTTTAAATGATGATATAAATAGTCCTATAATTCTTAATGTTTATGGAGATAATGAGCAAAATAAAATGATTAATACCAATCCTCTTGAAGGAGGTAAATTTGATACAGATGACATTTACAAGTATAGTAGTGCAATATATGAGATATTACCATCTTTAAATTATAAGTATGAAGATGGAGAAGGTACAAGTATTAAAACTTTCAATGGTAAATCTTTCTTCTCTATGACATCAGGTGAAGAGGAGAAACCACAAGCTTCAGACTTCTATACTGGTACAGAATATCAAGATTTATTTACTTCATATTACGGTAATAAAACATTAATTGAGCCTAGAATACAAAAAGCACCTAATATGTTATTTAAACATCAAGGCGTTTTTTATGATGATGGTACACCCGATAACCATATAACTACTCTATTCCTTTCTGAACGAGGGGATATTAGAACATCAGTATTAAATACAGAAACACAACAAAGAACAACACAAGAAATGTCGAGTGATGGGTCTTATAGAGTAATTAAACAAGACGATGACTTAATGTTAGATGAAGCTCAAGTTTGGGTTGAGTATGGAATTAGTGAAGATAATAAATTTTATATTAAAAATGATAAACATAAATTTGAATTTACAGATGATGGTATTTATATAGATGAAAAGCCTATGTTAGAAAACTTAGGAGATAGTATTGAAGAATCTATGAGAAACTTAGAAGAGATACAAAAAGAACTTGAAGATATAAATTATCTCTTAGAAGGTGTAGGGAAGGACAATCTAGAGGAACTTATTGCCTCTACTAAAGAGTCTATAGAGGCATCTAACCAAGCTACTAAAGATGTTCAAACCTTAGGAACAAATATAAGTGCTGTAAGTTCTAGAACAGAAGGTATTATAACACAATTCCAAGATTTTAGAGATAGAACATTCAAAGATTTTTATGATGAGGTAAATGAATACCTAGCAGGGGAGCATGGCTCGGTTGAAACAATTGTTAACACTGATTTACCTGCAATAAGAAATACCGAACAAAAGTATAGACATACAACGTTTAGGGACATAAAAATACATGCAGATTTACCCTTTAAATTCCAAGACTATGATAGTATAGTAGCAAATGATAATGTGACGTATTATTTCCCACAAGGTATTGCCATTAATAACGGTCAAACCTATATTATACATTCAGCTCCTGAGAGTGGTACTAAAAGACTAATTGTTATCTATGATGAGTTTTATAAGTATGTTAATATGTTTTACGCAGGAACAACCGGAGGAGAAGGTCTTCATGTAGAAACAGAAGGAACTAAAACTTACCTCTATGCTAGAACAAGCAATAATAATATAGGTAAGTTTGATGTAACTAATTCTAGAAATATTGAGGAGAAATCAACGTTACAACCTGTAGAAGAATATAATATAAATGCATACATGAATTTCTTTAGAACAGAAAGTGGATGGGGAGTAGAATACAATAACCAAACTAAAGGTGTGTTTTTACAGAGAGATACGGTAGTATTTTTCAACAAGGATTTCAGTAAAAAAACAGGGTACTTATGGATAAACCCTTCTAATTCTACATTATGGTCAAGTAATTTATTGGGGGGAGTTACAAACCACTCAGCTAAGAAGCAAGGTATGACACTTATAAATAATACCATCATACAGACACTAGGAGGTAACTGGAACCCAACTAGAGATAAGGAACCACATACTTATCATTTACAAGGGGTACAAGAGATAAGCCCTAGTGGAGATATTATGAATGATTATACGTATCATCCTTATGAGTTACGAGATTACCTAACTAAACAAGGTAAAGTTGTCGATATGATTGAACATGAAGGTGCGTTCTCTTATAATAATAGACTATTTAGTATTATTGTTTACAAAAGCAGAACTAAATCAGATGCAAATAAACAAGGTGTACTTATTGTAGAATACAAACCTAAAGAGAAAGAATACACTTTCAATAAGACAGGGGAGCCTTTCTTGGCACCTACAGCTAACTATAACCCTTATAAAACTAATATTGATGGTAAGCTTTATAATGAATACACAGGAGAAGAAATAACAAATATTAAAGACCTTATAAGATATATGGTATCAACGTATCAAAGTAATATTGTATTCTATTCATCCAAGGTATCTATGTTAGACTATGATGAGGTAGCTATACCTGGAGGGTTAAGAGTAGAAGTAGAGAATCTAAATAACTATACATTCCATTTACTGTACAGAGGTAATGCTACTAATGAAGTTTATATAATAAATTATACAGCCTCTACAGATAGCTTTAATATAACTTCACAAGACTCTGATAACAAATACGATAAACTAGATTTAAGTACTATTAAATATAAGATGACAGGGTACGTAACAAATGCTACAAATACACCTACAAGTACTAGACATGGTTATATAGATTCAAGAAGGTATGGCTCTAATTCTAAATTGTTCTTCTCTCCTTATAATAGTTACGAAACATATATGAACCTAAATCTAGGGGGAGTATGGCAAGGTTGGGAAAAAACAGGAAGTAACACAGATAACAACAACCCTGTAGTAGTATCTAAAGAAGAACCTGCAGAAGCAGTTATTTGGTTTGAGGTGACTGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f3f11697510f53bbfe61959c61ed526f4bb9823218a2d32091dbadbddda85474
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7785
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank