Protein

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Genbank accession
AUS00526.1 [GenBank]
Protein name
pectin lyase fold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTIPKITPYSGGVANPDGSQTQTEFTQNMFDQLSYEAELSTELNNTIDGINDTATQVDSDATSAAQSAAAAEAAVSGLSYQGLWPDTGGSADKGDTYQTQVSGTPTGQYFTALQNTTVDPVGDDVNWRSVVSGSSIGLQEVIATGSTAPRALSDRFSDIKSVRDDRVAGDGVADDTAALEGLPAGAYHMPDGEYVIDGATLPKTLRFIMSQGARFKAINNPSEINSVIDAVNQPVDWKYVNNCKINQYDITVGTDKDFQEIQEAIDFVPSNMWQRFVARVDDGDYSSEHLNVDGKIARSTNIDLDNSISGEHTGLFIVGNTTNPENVKIGSFLAVSCYGATFQPQLSGCDMVSTVPKTNEGASVEFYGCSNGAVLDVNFSAVGGDKGIMAYGGSNVSVENVDFGDQIYNDLFVTKHCSHISSNSNTRQGVGKSPTGTAKRYVSNPISGSIHFNDMSGLKSASFDRVRQGGNMNGFTYNAAEQTLYGPMQLNDSPSNYQTYFTNLDSFSHTESLVDSTTSIDATKGLNLHCGSVPNAFSQAFLRRDNTLSTQNIIYRQQLKAAVSFPSMSGAFLELGIGFGNGRAYFEVGETQVRGIFVDFSGVSTNVVLCDTSDIVGDKCVFDLSVERDNSTASTQLANIRFKISTKTFEFYKAINSVAGSIENTYEWYTKIQSVDGSERDVYIGELSLYRS
Physico‐chemical
properties
protein length:692 AA
molecular weight: 74461,85870 Da
isoelectric point:4,48002
aromaticity:0,09249
hydropathy:-0,32153

Domains

Domains [InterPro]
DC_0837
STR
1–295
DC_0837 DC_2185
IPR012334
STR
161–451
IPR012334
IPR011050
STR
248–456
IPR011050
AUS00526.1
1 692
Architecture
STR
RBD
STR 1-456 | RBD 457-692
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUS00526.1
1 692
Domain Start End Length (AA) Confidence
N-terminal 1 176 176 0,9893
Central domain 177 471 296 0,9214
C-terminal 472 692 220 0,9712
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-176
Central
177-471
C-terminal
472-692

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.276.O._10N.286.54.E4
[NCBI] 		1881277 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUS00526.1 [NCBI]
Genbank nucleotide accession
MG592644 [NCBI]
CDS location
range 24770 -> 26848
strand +
CDS
ATGACAATTCCAAAGATTACGCCATATTCCGGCGGCGTAGCAAATCCAGACGGTAGCCAGACGCAAACTGAATTTACGCAAAACATGTTTGACCAGTTGAGTTATGAGGCTGAATTATCGACTGAGCTAAATAACACCATTGATGGCATTAACGATACAGCAACTCAGGTTGATTCCGATGCGACTAGTGCAGCGCAAAGTGCAGCAGCAGCAGAGGCGGCGGTTTCTGGATTGAGTTATCAAGGCTTATGGCCCGACACAGGTGGCAGTGCTGATAAAGGTGATACATATCAAACTCAAGTAAGCGGCACACCTACCGGTCAATATTTCACAGCTTTGCAAAACACAACAGTTGATCCGGTTGGTGATGACGTGAATTGGCGGAGTGTTGTTAGTGGTAGCAGTATCGGATTGCAAGAAGTTATAGCAACAGGATCAACAGCGCCGAGAGCATTGAGTGACCGTTTTTCTGACATAAAGAGTGTAAGGGATGACAGGGTCGCTGGTGATGGGGTTGCGGATGATACAGCGGCACTTGAGGGGCTGCCGGCAGGGGCGTATCACATGCCTGACGGGGAGTACGTTATTGACGGCGCAACACTCCCAAAAACATTGCGCTTTATCATGTCGCAAGGCGCAAGATTTAAAGCCATCAATAACCCTAGCGAAATAAACTCTGTTATTGATGCAGTTAATCAGCCTGTAGATTGGAAGTATGTAAACAACTGTAAGATAAACCAATACGACATAACAGTAGGTACTGACAAGGATTTTCAGGAGATACAAGAAGCTATAGATTTCGTCCCTTCGAATATGTGGCAGCGTTTTGTAGCTAGGGTTGATGATGGGGATTACTCGTCAGAGCACTTAAACGTCGACGGGAAAATCGCACGGTCAACTAATATAGATTTAGATAACTCTATATCAGGAGAGCATACGGGTTTATTTATTGTAGGCAATACTACCAACCCAGAGAATGTAAAAATTGGGTCTTTCTTGGCAGTTAGTTGTTACGGAGCCACCTTTCAACCTCAACTCTCTGGCTGCGATATGGTCAGTACGGTCCCAAAAACCAACGAGGGTGCTTCAGTTGAGTTTTACGGTTGCTCTAATGGCGCTGTTTTGGATGTTAATTTCTCCGCTGTCGGTGGCGATAAAGGAATTATGGCTTACGGTGGGTCCAACGTAAGTGTTGAGAATGTGGATTTTGGAGATCAAATATATAACGACTTATTCGTTACCAAGCATTGTAGCCATATATCTTCTAACAGTAATACACGCCAAGGGGTAGGGAAATCACCTACGGGAACAGCTAAACGCTATGTTTCTAACCCTATAAGTGGTTCTATTCATTTTAATGATATGTCTGGCCTTAAATCAGCTTCGTTTGATCGAGTTAGACAAGGCGGTAACATGAATGGGTTCACCTATAACGCCGCCGAGCAGACGCTTTATGGGCCAATGCAGTTAAATGATTCACCTAGCAACTATCAGACATACTTTACAAATCTAGACAGCTTTTCTCACACGGAGAGCCTTGTTGACTCCACAACGTCAATAGATGCAACCAAGGGGCTAAACCTGCACTGCGGGTCGGTTCCAAATGCTTTTTCACAGGCATTTTTAAGAAGGGATAATACACTATCCACTCAGAATATTATTTATCGTCAGCAATTGAAGGCAGCGGTTAGCTTTCCATCTATGTCTGGTGCGTTTCTGGAGTTGGGGATTGGCTTTGGTAATGGCAGGGCTTACTTTGAAGTTGGAGAAACTCAGGTAAGAGGTATTTTTGTTGACTTTTCTGGGGTTTCAACAAATGTTGTCCTTTGTGATACTTCGGATATTGTGGGTGACAAGTGTGTGTTTGACCTCTCCGTTGAACGAGATAACTCAACGGCAAGTACTCAACTAGCAAATATAAGATTTAAAATATCAACAAAAACCTTTGAGTTCTATAAAGCTATAAACTCGGTTGCTGGCTCTATTGAGAATACATACGAATGGTACACCAAGATTCAGAGTGTGGATGGGTCGGAAAGAGATGTTTACATCGGGGAGCTTTCGCTTTATAGAAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3641c94928afeb40af3bb5c35fcf8c4656b51b4b25e983a11355bec60761d199
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7000
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank