Protein

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Genbank accession
QGZ13301.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MLNEDVVKNINKLNNEQDNINLELSKKANKEDLEKLIQGGPNVSVSKDISINNWILEENVYTVIVEHNLVTRKVLVSLIDKSTNNNVFCSYQILDDNSIKVFNESNNELECIVVNGNSAINMISATIDDNRSTETTTYSSVKIEALLKVLENKIDDIENLKEIDNIKCSTNTGEYTIENSKKGYLTNFNIEGKTLIDLWGKTSSDFSLWKATFVDGKINILTENDIRYSNFFTINYTSYKPDTIYTIIVDVDKNTLPSTSGIYIHSLGEENSVFIPNLTNIAIPGGVIGKFKYTFTTISDLSDCNVVLRSVLDNDTLTSGYEVSLKITILEGDYTDINIDYSNELLSVGQRDKIEFLSYQYSGINIFNKNADFKDNYILQYLNGEELISEASNHKYTLDYIEIEPDTEYTFYNCSRNICWYDINKSFIPAPLNERIIGDKDIFYVARSPKNAKYLRVTIIKDLHDNGNKTIITKGNKYDKKTIPYTLRSLPNGVKDEIVYKNNKYYLIKRCEEHTYTDIGNLNLSHVYDNTLQFMGTLTPQAVVDSLDIAYVLCNNLNGKSRNDFNNNDIEGCSTTGSGDIAFKILKSKLTTQDGNGFNEWIKNNPITIIYQLAEPQEIELTSLNLEQYNNQTRFICNFGIVIPDISFESTQNLGSHIEVIRNNIKNYNVRTDFPFSINFLNGWQPYLGYASAVGNYCTNNNFVTINATINGGVTTAGTIIGKIPSKYAPRKNIIVIFQTTDGKYYNGIIRTNGEIEIYYNDITYRSWLYLYVNYLI
Physico‐chemical
properties
protein length:777 AA
molecular weight: 88416,26700 Da
isoelectric point:4,92165
aromaticity:0,10682
hydropathy:-0,34865

Domains

Domains [InterPro]
Coil
Unmapped
3–30
Coil Coil DC_0219
QGZ13301.1
1 777
Architecture
STR
STR 320-777
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ13301.1
1 777
Domain Start End Length (AA) Confidence
N-terminal 1 182 182 0,9395
Central domain 183 385 204 0,3087
C-terminal 386 777 391 0,7304
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-182
Central
183-385
C-terminal
386-777

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiCDKH01
[NCBI] 		2686203 No lineage information
Host Clostridioides difficile
[NCBI] 		1496 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Peptostreptococcales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ13301.1 [NCBI]
Genbank nucleotide accession
MN718463.1 [NCBI]
CDS location
range 611 -> 2944
strand +
CDS
TTGCTAAATGAAGATGTAGTAAAAAATATTAATAAATTAAATAATGAGCAGGATAATATTAATCTAGAACTTAGTAAAAAAGCAAATAAAGAAGATTTAGAAAAATTAATTCAGGGAGGTCCTAATGTATCTGTATCTAAAGATATATCAATAAATAACTGGATATTAGAAGAAAATGTATACACAGTTATAGTTGAGCATAACCTTGTAACTAGAAAAGTGCTTGTAAGTTTAATAGATAAATCTACTAATAACAATGTATTTTGCTCATACCAAATCTTAGATGATAATAGTATAAAAGTTTTTAATGAATCGAATAATGAACTAGAATGTATAGTTGTAAATGGAAACTCAGCTATTAACATGATTTCAGCAACTATTGATGATAATAGAAGTACTGAAACAACTACTTATTCATCTGTAAAGATAGAAGCTTTATTAAAAGTTCTAGAAAATAAAATTGATGATATAGAAAATCTCAAAGAAATTGACAATATAAAATGTAGTACTAATACAGGAGAATATACAATAGAAAATAGCAAAAAGGGCTATTTAACTAATTTTAATATAGAAGGAAAGACATTAATTGATTTATGGGGAAAAACTAGTTCAGATTTTTCTTTATGGAAAGCAACTTTTGTAGATGGAAAAATAAATATACTAACAGAAAATGATATAAGATATTCTAATTTTTTTACAATCAATTACACTTCATATAAACCAGATACCATATATACAATCATAGTTGATGTTGATAAAAACACTTTACCGAGTACAAGTGGAATATATATTCATAGTTTAGGCGAAGAAAATTCAGTATTTATTCCTAATCTGACAAATATAGCTATACCAGGAGGAGTAATTGGTAAATTTAAATATACATTTACAACAATATCAGACTTAAGTGATTGTAATGTTGTTTTAAGGAGTGTTTTAGATAACGATACACTTACATCTGGTTATGAAGTAAGTTTGAAAATTACCATATTAGAAGGAGATTATACAGATATTAATATAGATTACTCTAATGAACTATTAAGTGTTGGGCAAAGAGATAAAATAGAATTTTTAAGTTATCAATATAGTGGAATTAATATCTTTAATAAGAATGCCGATTTTAAAGATAATTATATTTTACAATACCTTAATGGAGAGGAACTTATTTCTGAAGCTAGTAATCATAAATATACCCTAGACTATATAGAAATAGAACCAGATACAGAGTATACTTTTTATAATTGTAGTAGAAATATTTGTTGGTATGATATAAATAAAAGTTTCATACCAGCACCATTAAATGAAAGAATAATAGGAGATAAAGATATTTTTTATGTTGCTAGAAGTCCTAAAAATGCAAAATATCTAAGAGTTACTATAATAAAAGATTTACATGATAATGGGAATAAAACAATTATAACTAAAGGAAATAAATATGATAAAAAGACAATTCCATATACATTAAGAAGTTTACCAAATGGAGTGAAAGATGAAATAGTTTATAAAAATAATAAATATTACTTAATAAAAAGATGTGAGGAACATACTTATACTGATATTGGAAATCTTAATTTATCACATGTATATGATAATACTCTGCAATTTATGGGAACATTAACTCCTCAAGCTGTTGTAGATAGTTTAGACATAGCATATGTTTTATGTAATAATTTAAATGGGAAAAGTAGAAATGATTTTAACAATAATGACATAGAGGGATGCTCAACTACTGGTAGTGGTGATATAGCATTTAAAATATTAAAAAGTAAACTTACTACACAAGATGGAAATGGGTTTAATGAATGGATAAAAAATAATCCAATAACTATCATCTACCAACTTGCAGAACCACAAGAAATTGAATTAACATCACTAAATTTAGAACAATATAATAATCAAACTAGATTTATTTGTAACTTTGGTATTGTGATACCAGACATTAGTTTTGAAAGTACACAAAATTTAGGTAGCCATATAGAAGTTATCAGAAATAATATAAAAAATTACAATGTTAGAACTGATTTTCCATTTTCAATAAACTTTCTTAATGGATGGCAGCCATATCTTGGATATGCTAGTGCTGTTGGAAACTATTGCACAAATAATAACTTTGTAACAATTAATGCAACTATTAATGGAGGTGTTACAACGGCAGGTACTATCATTGGAAAGATACCTTCGAAATATGCACCTCGTAAAAACATAATAGTAATATTTCAAACAACAGATGGAAAGTATTATAACGGAATCATTCGTACAAATGGAGAAATTGAGATATATTATAATGATATAACTTATCGTAGTTGGCTGTATTTATATGTAAACTATTTAATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
9bb5c96be7cc319d17547e32642a4f6528258cd0fe66dbd09419385eac08dddf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7066
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of a new Clostridioides difficile Siphoviride bacteriophage from clinical strains Hinc,K., Iwanicki,A., Obuchowski,M., Martirosjan,G. and Kabala,M. 2021-02-22 — GenBank