Protein

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Genbank accession
AAA32559.1 [GenBank]
Protein name
tail protein pb5
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSFFAGKLNNKSILSLRRGSGGDTNQHINPDSQTIFHSDMSHVIITETHSTGLRLDQGAGDYYWSEMPSRVTQLHNNDPNRVVLTEIEFSDGSRHMLSGMSMGVGAKAYGIINPQIMSQGGLKTQITASADLSLDVGYFNTGTSGTIPQKLRDGTGCQHMFGAFSGRRGFASSAMYLGGAALYKSAWSGSGYVVADAGTLTIPSDYVRHPGARNFGFNAIYVRGRSCNRVLYGMEGPNYTTGGAVQGASSSGALNFTYNPSNPESPKYSVGFARADPTNYAYWESMGDPNDSANGPIGIYSEHLGIYPSKITWYVTNLVYNGSGYNIDGGLFNGNDIKLSPREFIIKGVNVNNTSWKFINFIEKNFNVGNRADFRDVGCNLSKDSPSTGISGIATFGLPTTESNNAPSIKGGNVGGLHANVVSIYNFLPSTSWYVSSNPPKIGNNYGDVWSENLLPLRLLGGSGSTILSGNIVFQGNGSVHVGTVGLDLNSSRNGAIVCTMEFIDDTWLSAGGIGCFNPTEMLSQGAEYGDSRFRIGGNTINKKLHQILSLPAGEYVPFFTIKGTVVNACKLQAAAYNPTPYWVSGLPGSVGQTGYYTLTYYMRNDGNNNISIWLDSSMSNIIGMKACLPNIKLIIQRLT
Physico‐chemical
properties
protein length:640 AA
molecular weight: 68755,16440 Da
isoelectric point:8,01937
aromaticity:0,10469
hydropathy:-0,22688

Domains

Domains [InterPro]
IPR059609
RBD
1–640
IPR059609
AAA32559.1
1 640
Architecture
RBD
RBD 1-640
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAA32559.1
1 640
Domain Start End Length (AA) Confidence
N-terminal 1 169 169 0,0772
Central domain 170 368 200 0,3307
C-terminal 369 640 271 0,9453
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-169
Central
170-368
C-terminal
369-640

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage T5
[NCBI] 		2695836 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus T5
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAA32559.1 [NCBI]
Genbank nucleotide accession
M62847 [NCBI]
CDS location
range 276 -> 2198
strand +
CDS
ATGAGTTTTTTCGCTGGCAAGCTAAATAACAAATCTATACTCTCACTGCGAAGGGGTAGTGGTGGAGATACTAACCAACATATCAACCCTGATTCCCAAACCATCTTTCATTCAGATATGTCGCACGTAATTATAACGGAAACTCATTCTACTGGATTAAGATTGGATCAGGGGGCTGGTGACTATTACTGGTCTGAAATGCCTAGTAGAGTTACACAGCTACATAATAATGACCCTAATAGAGTTGTATTAACAGAGATTGAGTTTTCTGATGGCTCTAGACATATGCTATCTGGCATGTCTATGGGAGTAGGTGCAAAAGCCTATGGTATTATAAATCCTCAGATTATGTCTCAGGGTGGATTAAAAACACAAATAACAGCTAGTGCCGATCTTTCACTTGATGTAGGTTATTTTAATACGGGTACTAGTGGCACTATACCACAAAAGTTAAGAGATGGCACAGGATGTCAACATATGTTCGGTGCTTTTAGTGGGAGAAGGGGGTTTGCATCAAGTGCAATGTACTTAGGTGGTGCTGCTCTTTACAAATCTGCGTGGAGTGGTTCCGGTTATGTGGTGGCTGATGCAGGAACCTTAACTATCCCTAGTGATTATGTTAGACACCCAGGAGCTAGGAACTTTGGTTTTAATGCTATATACGTTCGTGGTAGGTCTTGTAATAGGGTTCTTTATGGTATGGAAGGACCAAACTATACTACCGGTGGGGCTGTGCAGGGAGCTTCGAGCTCTGGAGCCCTTAACTTTACGTATAACCCCAGTAATCCAGAATCACCAAAGTATTCCGTAGGTTTCGCACGTGCTGATCCTACTAACTATGCTTACTGGGAAAGTATGGGAGATCCTAATGATTCTGCCAATGGACCTATAGGTATCTACAGCGAACATTTAGGCATTTATCCATCTAAAATTACATGGTATGTTACTAACCTAGTATACAATGGTTCTGGGTATAATATAGACGGTGGGTTATTTAACGGTAATGACATTAAGCTCAGCCCAAGAGAATTTATTATTAAAGGGGTTAATGTTAATAATACATCTTGGAAATTTATTAATTTTATAGAGAAAAATTTCAACGTTGGTAACAGAGCTGATTTTCGTGATGTTGGTTGTAATCTAAGTAAAGATTCTCCCTCAACAGGAATATCAGGTATAGCAACATTTGGGCTACCAACCACAGAGAGCAATAATGCTCCTAGTATTAAAGGTGGTAATGTTGGTGGCTTACATGCTAATGTTGTTAGTATTTATAATTTTTTACCTTCGACATCTTGGTATGTATCTAGTAATCCACCAAAAATAGGTAATAACTATGGCGACGTTTGGAGTGAGAATTTATTACCATTAAGACTCCTGGGAGGTAGTGGTAGCACTATATTATCTGGAAACATAGTATTCCAGGGTAATGGATCTGTACATGTTGGTACTGTGGGGTTAGATCTTAATAGCAGTAGAAATGGTGCTATTGTATGTACTATGGAGTTTATAGATGATACATGGCTATCCGCAGGCGGTATTGGTTGCTTCAATCCTACAGAAATGTTATCCCAAGGGGCAGAATACGGTGATAGTAGATTTAGGATAGGGGGGAATACCATAAATAAAAAACTGCATCAAATACTATCTCTACCAGCCGGAGAATACGTTCCATTCTTTACTATAAAAGGTACAGTTGTAAACGCTTGTAAATTGCAGGCTGCTGCGTATAATCCAACACCATATTGGGTATCTGGGTTGCCTGGATCTGTTGGGCAAACAGGATACTATACTCTAACTTACTATATGAGAAATGATGGAAATAATAATATCTCTATTTGGTTAGATTCTTCCATGAGTAATATAATTGGCATGAAAGCATGCTTACCTAATATTAAACTTATAATTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
17047daf1c772927dd67bb1e614a46f45aa9bcc44381296fa1add8f88adfd160
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2485
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Cloning, sequencing, and recombinational analysis with bacteriophage BF23 of the bacteriophage T5 oad gene encoding the receptor-binding protein Krauel,V. and Heller,K.J. 1991 1825083 GenBank