Protein

View in Explore
Genbank accession
YP_009613856.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MQRQLFYIKGAKGGGGDAHTPVEQPDSIRSQAKARLLIALGEGEMALGLDDTKIFLDGTPLGNPDGSRNFDGVRWEVRPGVQQQDPISGFPAVENETGFGTEIKQASPWVHALTRTEIDAVVVRVGVPALMYQEDDGDVVGTSVSFRIDLAVGGGTFSTQGKFAISGKTTTLYERSIRVNLPRSSSGWRIRVVRETPDSDSARLANTLKIQAITEVIDARFRYPHTALLFIEFNAKSFQNIPKISCLAKGRIIRVPSNYDPDTRTYSGNWDGSFKWAYTNNPAWVWYDVLTQPRFGLGKRVTAAMLDKWELYRIAQRCDQMVPDGAGGVEPRFEFNCYLQAQADAWTVIRDIAAGFNGLTYWGNNMFNVVSDMPVKAPSQIVTRASIIGKPTYSSGSRKTRFSSALVNYSDAQNHYADTPTAVMFQELVAQLGFEQTQLTAIGCTRESEAQRRASWAVLTNSVDRLVKLRVGLEGFAFLPGTVFALADERIGGRVMGGRVAGYDEKTKQVMLDRTTDGKPGDDLLIRTTGGAVESRKIASVGDSVVTIAEPFTAAPAVNAVWVVDSGELALQKFRVLTLDFDDENNTFEISAAEYNDSKYDAVDDGARLDKPPVSLLPTGIVNAPTAVAITSYEQVRQNQRVTTMRATWEPSRMADGKVQPDIVAYEAQWRRGANDWVNVPASSVNGFEVQGVFAGDYLVRVRAVTSSGASSVWASSVLTHIDGRQGEVPAPVSLRASSDVVFGIDVAWAFPKDAEDTEYTEIQYAPTNTEEAFTALSLSPYPSKSFAHSGLKANAVFWYRARLVDRLGNKSEWGASVQGRASIDTDSIMDALGDQVMSSEGGKALETSINAAIDAIEQNAIANDGDIQRKSKKLGELSAEIVRIDNVVVNEVGALAESLTAVKASVAENEAAVATKMTAKFDYDGNGYAVWDTNAGITYNGEYYSAGMSISAEVKEGEVSTQVAMLADRFAVMAKVGDKPELMFGVVGDQAYLRDAFIRDASIGSAKIAGVLQSDDYTPGGAGWTINKSGAVEFNNATIRGTVYAENGDFKGTVHANRIVGDVVQYSNFTFSSKDVSVGNGATRVLFKVPAEDFEQTIISNGYVKFFAGNGGMTRISCYVESSGVRKVLTELWSNGVTAEYKFNLSGLTLPPGANGTWIRIEFTKTWPHTITQEKPHTLLTYDGAQLLMGRARRGSAEILEG
Physico‐chemical
properties
protein length:1203 AA
molecular weight: 130623,96130 Da
isoelectric point:5,22142
aromaticity:0,09144
hydropathy:-0,22427

Domains

Domains [InterPro]
DC_0014
STR
1–1183
DC_0014
IPR053171
Unmapped
7–877
IPR053171 IPR015406
IPR055385
ATT
93–219
IPR055385 IPR032876 IPR013783 IPR013783
IPR003961
STR
624–725
IPR003961
IPR036116
STR
641–717
IPR036116
IPR003961
STR
643–711
IPR003961
YP_009613856.1
1 1203
Architecture
STR
ATT
STR
ATT
STR
STR 1-92 | ATT 93-219 | STR 220-341 | ATT 342-501 | STR 502-1183 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009613856.1
1 1203
Domain Start End Length (AA) Confidence
N-terminal 1 499 499 0,8538
Central domain 500 1013 515 0,0794
C-terminal 1014 1203 189 0,7870
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-499
Central
500-1013
C-terminal
1014-1203

Taxonomy

  Name Taxonomy ID Lineage
Phage Edwardsiella phage eiAU
[NCBI] 		945083 Uroviricota > Caudoviricetes > Eiauvirus >
Host Edwardsiella ictaluri
[NCBI] 		67780 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009613856.1 [NCBI]
Genbank nucleotide accession
NC_042029.1 [NCBI]
CDS location
range 5400 -> 9011
strand +
CDS
ATGCAGAGACAACTTTTTTACATCAAAGGCGCAAAGGGTGGTGGCGGCGATGCGCATACACCGGTAGAGCAACCGGATAGTATTCGTAGCCAGGCAAAGGCCCGTCTACTCATCGCATTAGGCGAGGGGGAAATGGCGCTGGGGTTGGATGACACTAAAATTTTCCTGGACGGAACGCCGCTAGGCAATCCGGACGGGTCGCGTAACTTCGACGGCGTGCGTTGGGAAGTCCGCCCTGGCGTACAGCAGCAGGACCCGATCTCGGGTTTCCCCGCAGTAGAAAACGAGACGGGCTTCGGTACTGAAATTAAACAGGCCAGCCCGTGGGTGCATGCGCTAACCAGAACCGAGATCGACGCTGTCGTCGTTCGCGTAGGCGTTCCCGCGCTAATGTACCAGGAGGATGACGGCGACGTAGTCGGCACTTCGGTATCGTTCCGGATTGATCTTGCCGTTGGGGGAGGCACGTTTAGTACACAGGGTAAATTCGCCATCTCAGGTAAAACAACTACGCTCTATGAGCGGTCGATACGTGTCAACCTGCCGCGTAGCTCGTCCGGCTGGCGGATTCGCGTTGTGCGTGAAACCCCGGATTCAGATAGCGCACGTCTCGCCAACACGCTTAAAATTCAGGCCATCACGGAGGTTATCGACGCACGTTTTCGATACCCGCATACCGCCTTGTTGTTTATCGAGTTCAACGCAAAATCATTCCAGAATATCCCGAAAATATCGTGCCTGGCCAAAGGGCGTATTATCCGAGTACCAAGTAACTATGACCCAGACACCCGCACCTATTCCGGCAATTGGGATGGGTCGTTTAAATGGGCCTACACCAACAATCCGGCGTGGGTATGGTACGACGTATTGACTCAACCGCGGTTCGGGCTTGGTAAGCGCGTTACGGCGGCCATGCTAGATAAATGGGAGTTGTACCGCATCGCACAGCGCTGCGATCAGATGGTGCCGGATGGTGCCGGTGGTGTTGAGCCGCGTTTCGAGTTCAACTGTTATTTGCAGGCGCAGGCCGATGCCTGGACGGTGATCCGTGATATCGCGGCGGGATTTAACGGGCTGACGTATTGGGGAAACAACATGTTCAATGTGGTTTCCGATATGCCGGTGAAAGCACCATCGCAGATCGTCACCCGCGCCTCTATCATCGGCAAGCCAACCTATTCAAGCGGCAGCCGTAAAACGCGTTTTAGCTCGGCTCTTGTTAATTATAGTGACGCCCAAAACCATTACGCAGATACCCCGACGGCCGTTATGTTCCAGGAGCTTGTGGCGCAACTCGGTTTCGAACAGACCCAACTGACAGCGATCGGCTGTACGCGCGAAAGCGAAGCGCAGCGCCGCGCATCATGGGCGGTGCTTACCAACTCGGTAGATCGGCTGGTAAAACTCCGCGTAGGGTTGGAGGGTTTCGCCTTTCTGCCCGGTACGGTCTTCGCCTTGGCCGACGAGCGGATCGGGGGCCGTGTTATGGGTGGCCGCGTCGCGGGATATGACGAGAAAACCAAACAGGTAATGCTCGATCGTACTACGGACGGTAAACCGGGCGATGATTTGCTGATCCGCACCACTGGCGGCGCGGTAGAGTCCAGAAAAATTGCTTCGGTCGGGGATAGCGTTGTAACTATCGCCGAGCCATTCACGGCAGCGCCCGCGGTAAATGCGGTTTGGGTAGTTGACTCAGGCGAATTGGCGTTGCAAAAATTCCGCGTGTTAACGCTAGATTTCGACGACGAAAATAACACGTTCGAGATTAGCGCAGCGGAGTATAACGACTCGAAATATGATGCCGTAGACGATGGCGCCAGGTTAGACAAGCCACCAGTTAGCCTTTTGCCGACCGGAATTGTCAACGCACCGACCGCGGTCGCCATCACCAGTTACGAGCAGGTGCGACAAAACCAGCGTGTAACGACGATGCGCGCTACCTGGGAGCCGTCGCGCATGGCCGACGGTAAAGTACAGCCGGATATTGTCGCGTATGAAGCACAATGGCGCAGAGGGGCCAATGATTGGGTTAATGTGCCGGCGAGCAGTGTAAATGGTTTTGAGGTACAAGGTGTATTTGCCGGCGATTATCTGGTGCGCGTTCGTGCGGTCACGTCTTCCGGGGCGTCTAGTGTGTGGGCATCCAGTGTATTAACGCATATCGACGGCCGCCAGGGTGAAGTACCCGCCCCAGTATCCCTGAGAGCATCTAGCGATGTAGTCTTTGGTATTGATGTCGCGTGGGCGTTCCCCAAAGATGCCGAGGACACCGAATACACTGAGATCCAATACGCACCGACAAACACTGAAGAAGCCTTTACGGCGCTTAGTTTATCCCCATACCCGAGCAAGTCCTTCGCCCATAGTGGTCTTAAAGCTAATGCCGTCTTTTGGTATCGCGCACGTTTAGTTGACCGCCTCGGCAATAAATCGGAATGGGGCGCCAGTGTACAGGGGCGGGCATCAATCGACACGGATTCGATTATGGATGCGCTCGGGGATCAGGTCATGTCATCTGAAGGAGGTAAGGCGCTCGAGACGAGCATTAATGCCGCGATAGATGCCATTGAGCAGAACGCAATCGCCAATGACGGCGACATACAACGAAAATCCAAAAAATTAGGCGAACTATCCGCAGAGATCGTTAGAATCGATAATGTCGTGGTGAATGAAGTTGGCGCCCTGGCCGAATCGTTAACTGCGGTTAAAGCCTCGGTGGCAGAAAACGAAGCAGCCGTAGCAACAAAAATGACAGCGAAGTTCGATTACGACGGCAACGGTTACGCGGTATGGGATACTAACGCGGGGATAACATACAACGGGGAATATTATTCTGCTGGCATGTCAATTTCCGCTGAGGTGAAAGAGGGCGAGGTCTCTACGCAAGTCGCCATGCTGGCCGATCGTTTTGCCGTTATGGCTAAAGTAGGAGATAAACCAGAACTTATGTTTGGGGTGGTTGGTGACCAGGCATATCTGCGTGACGCATTCATTCGTGACGCCTCGATCGGTAGTGCTAAAATTGCGGGCGTCCTTCAATCGGATGACTACACCCCGGGTGGCGCCGGCTGGACTATTAATAAATCTGGGGCCGTAGAGTTCAATAACGCCACGATACGCGGCACTGTGTACGCGGAAAATGGCGATTTTAAAGGGACGGTGCACGCCAATAGAATAGTTGGCGACGTAGTACAATACTCAAACTTTACATTTTCAAGTAAAGATGTAAGCGTGGGCAATGGTGCCACAAGAGTCCTATTTAAGGTCCCCGCTGAAGATTTTGAACAGACCATTATATCCAATGGCTATGTAAAGTTTTTTGCCGGTAATGGCGGTATGACTAGAATATCATGTTACGTTGAATCCTCCGGAGTGCGAAAAGTCTTGACGGAATTATGGTCTAACGGGGTAACGGCGGAATATAAATTTAATCTATCGGGTTTGACTCTTCCGCCTGGTGCCAACGGCACATGGATACGAATAGAGTTCACCAAGACTTGGCCTCATACAATCACTCAGGAAAAACCGCATACACTGCTCACATATGACGGTGCCCAATTATTAATGGGGCGGGCTAGACGCGGTAGTGCCGAAATTTTAGAGGGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
45b79e4c1d80b6efb42e0393489c1bdfb8cd6915548168fd7e5a81a904ba5d7d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7751
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification of broad host specificity determinant of Edwardsiella ictaluri specific bacteriophages Hossain,M.J., Carrias,A., Terhune,J.S. and Liles,M.R. 2008-12 — GenBank