Protein

View in Explore
Genbank accession
AVR75892.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTIPKLTPYTGEVANPDGSQTQSEFTTNMFNQLSYEADLAAELDATIDGINNAIDEVSQNAASAESSANAAEAAASSAGYQGLWPDTGGGALKGETWQTQIGGTPTGEYYTALQNTSVDPVSDNVNWKAQNDLNTGNLSDYTDIIYRASDGNSAVENMIAGIPLATKEGASVTTVDNNHAHNWLILASASSNKYSVSLDNGLFAILVSSEVEIAGLGASSGDDVTQLVTGLATAENVRKIKASGLDSVELTNYITISRDDVFIKLPTLTWTADFDLYPGGTTDRQVGIFTVTGSRDIVTPMLINSPIEEGDSTYSLNSTSGLVEGGFAVIIGGGKFNHLTRVKKISGNQVTLDYTSGWDESAGLVSIYSAEPVKNVHVMIDEIIDASGSTVADNQITGVTFLDSFQGSVYVGNAKDMANPVCLTRRSHSLYIPYMDNQNPRFTDSGRGYTLQMNGSLFCHTGDIKGTGVRHVIDWTRSAYCQSDNIYGTETAQIAVTTHGAYEHDITVNNIYTSKGCVGTLALANAGASFGERTKRFKINNRVVINGQFDIQNSEDIEINSARAEESDFIRINADVTLNDCDFSLCTSFRVRSRTDRDQKSVTINGGKYPDIELQGFSGELRAVNATMNWFSNTDTTIIPRRVKTINCEHVIQATSTLTVTEDVSLSSPFISVPDTASSIGVIVECKKLSITAAECENSPVISHDGANAKVFTVNGLYDVDPNTLRTTATLRARNVDGLIVNITGVTSEYSGSGDIVEFGRSGNSNIILNMNGNYLNGPVNVTSFGSVVKSIVTSNFVKYLTDLPSTDSNNAVANNIQI
Physico‐chemical
properties
protein length:819 AA
molecular weight: 87588,75270 Da
isoelectric point:4,56158
aromaticity:0,07204
hydropathy:-0,19548

Domains

Domains [InterPro]
DC_0090
STR
1–819
DC_0090
Coil
Unmapped
40–74
Coil
AVR75892.1
1 819
Architecture
STR
STR 1-819
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVR75892.1
1 819
Domain Start End Length (AA) Confidence
N-terminal 1 225 225 0,9944
Central domain 226 808 584 0,9833
C-terminal 809 819 10 0,5736
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-225
Central
226-808
C-terminal
809-819

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage ValSw3-3
[NCBI] 		2138297 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVR75892.1 [NCBI]
Genbank nucleotide accession
MG676223.1 [NCBI]
CDS location
range 35978 -> 38437
strand -
CDS
ATGACCATTCCAAAGTTAACGCCATACACTGGAGAAGTTGCAAATCCAGACGGCAGTCAGACTCAGTCAGAGTTTACTACCAACATGTTTAATCAGCTCAGTTATGAGGCCGATTTAGCAGCAGAGTTAGACGCTACAATTGACGGCATTAACAATGCTATCGATGAGGTAAGTCAGAATGCCGCTAGCGCTGAAAGTTCAGCTAATGCAGCGGAAGCAGCCGCGTCGTCCGCAGGTTATCAAGGATTGTGGCCTGATACTGGAGGTGGCGCGCTAAAAGGTGAAACTTGGCAAACACAAATTGGTGGCACACCTACGGGTGAATATTACACAGCATTACAAAATACTAGCGTTGATCCTGTAAGTGATAATGTAAACTGGAAGGCTCAAAATGATTTAAATACGGGTAATCTTTCTGATTACACCGACATAATTTACAGGGCTTCAGACGGCAATTCTGCGGTTGAAAATATGATTGCAGGAATTCCTTTGGCGACCAAGGAAGGTGCTAGCGTTACCACTGTCGATAACAACCATGCTCACAACTGGTTGATATTAGCCTCTGCCAGCTCAAACAAATACTCTGTGAGCTTAGACAACGGTCTTTTTGCAATTCTGGTAAGTAGTGAGGTTGAAATCGCAGGCCTAGGCGCAAGCTCAGGTGACGACGTAACCCAGCTAGTGACGGGACTGGCTACTGCTGAAAATGTCAGAAAAATCAAAGCTTCAGGGTTGGATTCTGTTGAGTTAACCAACTACATCACCATTAGTCGCGATGATGTCTTCATTAAACTACCAACATTGACATGGACTGCGGATTTTGATTTGTATCCGGGCGGCACTACGGACAGGCAGGTGGGTATCTTTACTGTGACCGGATCAAGGGACATAGTGACTCCGATGTTAATAAACTCACCTATCGAAGAGGGTGACTCTACATACAGCTTGAATTCTACCTCTGGACTTGTTGAGGGTGGATTTGCTGTAATTATTGGTGGAGGCAAGTTTAACCACTTAACAAGAGTAAAAAAAATATCAGGGAACCAGGTGACACTAGACTACACATCCGGCTGGGACGAATCCGCAGGATTAGTCTCTATCTACAGTGCTGAGCCTGTAAAGAACGTTCATGTCATGATTGATGAGATAATTGACGCTTCTGGCTCAACTGTAGCGGACAATCAAATAACAGGAGTTACATTCCTTGATAGCTTCCAAGGTTCTGTATACGTGGGCAATGCTAAGGACATGGCAAACCCTGTCTGTTTAACTCGTCGTTCTCATTCGCTTTACATCCCTTATATGGATAACCAAAACCCTAGATTTACTGATTCGGGGAGAGGTTATACATTGCAGATGAACGGGTCGCTTTTTTGTCATACTGGCGATATTAAAGGTACAGGTGTTAGGCACGTGATAGACTGGACGAGAAGCGCCTACTGTCAAAGCGATAATATCTACGGAACTGAAACTGCACAAATTGCAGTAACAACGCACGGTGCTTACGAGCACGACATTACCGTTAACAACATCTATACGTCGAAGGGTTGTGTCGGCACTCTTGCTCTTGCAAATGCAGGCGCCAGCTTTGGAGAAAGAACTAAACGATTTAAGATAAATAACAGGGTTGTCATAAACGGTCAATTTGATATTCAAAATTCAGAAGATATCGAAATCAACAGTGCTAGAGCTGAAGAGTCAGACTTCATCAGGATTAATGCTGATGTTACGTTGAACGATTGTGACTTCTCGCTTTGCACGTCTTTCAGGGTCAGAAGTCGCACAGATAGAGACCAGAAATCTGTCACCATCAACGGTGGTAAATATCCAGATATTGAACTTCAGGGATTCAGTGGTGAGCTTAGGGCGGTAAATGCTACAATGAACTGGTTCTCTAACACGGACACCACCATAATTCCAAGGAGAGTTAAAACCATTAACTGTGAGCACGTCATTCAGGCAACTTCCACGTTAACAGTAACAGAGGATGTATCTCTGTCATCGCCATTTATCTCTGTGCCTGATACTGCATCAAGCATTGGGGTAATCGTTGAGTGTAAGAAGTTGTCGATTACAGCAGCAGAGTGTGAGAACTCTCCAGTAATTTCCCACGACGGTGCAAACGCGAAGGTGTTCACTGTTAACGGTCTTTATGATGTAGACCCTAATACATTAAGAACAACAGCAACACTTAGAGCGCGTAACGTTGACGGATTGATTGTTAACATCACCGGCGTCACAAGTGAGTACAGTGGGAGTGGCGACATTGTTGAGTTTGGTAGGTCAGGCAACTCAAATATAATATTAAACATGAACGGTAACTATTTGAACGGTCCTGTAAATGTTACCAGTTTTGGAAGTGTTGTTAAATCAATCGTAACCTCTAATTTTGTTAAATATTTAACTGATTTGCCAAGCACTGACTCAAACAACGCTGTAGCAAACAACATTCAGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
24a92df177b2395f23473e0f805d92fea6bb799430049822d9a46082b624d625
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8483
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of bacteriophage ValSw3-3 infecting Vibrio alginolyticus, a new member of a proposed genus in the family Siphoviridae Chen,L., Fan,J. and Ma,Y. 2020-05-04 — GenBank