Protein

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Genbank accession
YP_010674831.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSSNKPFPSSDLDVFKENSLILDNFVNSQENEHPDRFARKRPTITGIIKEAFNVRTDISNMNETLIGQSRWDAVPKNTSLALGGDNGALNKQAQALFNRTELLKTHAREALRRTYLEAGLNLVEGSFEAGGTLVKANDVLLQERTGRVFSGPVGVVAAGTDPASGEFVDRSSVLLRDMSQKIFSTTAAVISAAATLKIGDLVSTAGHTTVGVGAADYVVSTDIARPFLDISLGDGRIAKMLIKEYIDPASCGVDTTGVQPASLALAEISKHGSISWIGSLYIDQEFIFAAGNDLIGQGQHKSKLLFKNSGVGKGIVKSTRSRFYNFGVTLKDFLAPFDGQMITVSVQYDYYIYGTVPRESTGYDRLVLDHSSDIYAVSTGGTSPSGASTGRFLVLDTGDINGIPIPPLATQLGIYKSRFDNCTAIGFYCPLTLLSRTDRANQGAPWMHSNRFAGWVTKNNVVEFEALIQTVTPRAGSFTDNKIEDWVTQPYKNSQRIATMEGAGFKFVDCFFWDQHLYPDQSKLIVLRKSATGDTNWIERNSFYNDHRPSLEFVRCPITRNKISVENMTTNLWPAVIKITDKFGNGDCVGDIPILSNITTGTNISRFMAVNFTTPQTVGAVAQCTFKIKSKWPLATDPFRGAIYAIDIAINVKLTATGFEVKTHLLTPYTGIKTGIDIYADNPRLVNGEYMLDIVASQNSVAAPFPSIRLNDSPLQNGDWQLSNSYGIILPIPSGHGATTLSDAAVKIVDTLDLIAANTVISKTTAISI
Physico‐chemical
properties
protein length:769 AA
molecular weight: 83611,75260 Da
isoelectric point:6,44602
aromaticity:0,08843
hydropathy:-0,09324

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010674831.1
1 769
Domain Start End Length (AA) Confidence
N-terminal 1 260 260 0,9958
Central domain 261 574 315 0,9861
C-terminal 575 769 194 0,9017
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-260
Central
261-574
C-terminal
575-769

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage PS1
[NCBI] 		2591406 Uroviricota > Caudoviricetes > Chimalliviridae > Ferozepurvirus PS1 >
Host Aeromonas hydrophila subsp. hydrophila
[NCBI] 		196023 Pseudomonadota > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas > Aeromonas hydrophila subsp. hydrophila

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010674831.1 [NCBI]
Genbank nucleotide accession
NC_070998.1 [NCBI]
CDS location
range 160894 -> 163203
strand +
CDS
ATGTCTAGCAATAAACCTTTCCCGTCGTCAGATCTTGACGTATTTAAAGAAAACAGTCTTATATTAGACAATTTTGTCAACAGTCAGGAAAACGAACATCCTGATCGTTTTGCAAGAAAAAGGCCAACTATTACAGGGATTATCAAAGAAGCTTTTAATGTCCGCACTGATATTTCCAATATGAATGAAACTCTTATTGGTCAAAGTCGTTGGGATGCTGTTCCCAAGAACACTAGCTTAGCCCTAGGTGGGGATAATGGTGCTTTGAACAAACAAGCACAAGCTTTATTTAACCGAACCGAATTGTTGAAAACCCATGCAAGAGAAGCACTTCGTAGAACTTATTTAGAAGCTGGTTTAAATCTTGTTGAAGGTAGTTTTGAGGCTGGCGGTACTCTCGTAAAGGCTAATGACGTGTTGCTGCAAGAGCGCACCGGCAGGGTGTTCTCTGGTCCTGTCGGTGTAGTTGCCGCGGGGACTGACCCAGCGAGCGGTGAGTTTGTTGATAGAAGTTCAGTACTTCTAAGAGATATGTCGCAGAAAATATTCAGTACTACCGCGGCCGTGATATCAGCGGCAGCAACATTGAAAATCGGCGATTTAGTCAGCACAGCAGGTCACACTACGGTCGGGGTCGGGGCGGCAGATTACGTGGTCTCTACAGACATCGCCCGCCCTTTCTTGGACATTAGCTTGGGGGATGGACGGATAGCCAAAATGCTTATCAAGGAATACATAGACCCAGCTTCTTGTGGTGTTGATACAACTGGTGTTCAGCCGGCCTCGCTGGCGCTTGCTGAAATTTCAAAGCATGGTTCTATCTCGTGGATTGGTTCGCTTTATATAGACCAAGAGTTCATTTTCGCAGCAGGCAATGACCTGATAGGGCAAGGCCAGCATAAATCGAAGTTGTTATTCAAGAATTCCGGTGTTGGCAAGGGTATCGTCAAGTCTACCAGGAGCCGATTCTATAACTTTGGTGTTACGTTAAAGGATTTTTTGGCTCCATTCGATGGGCAGATGATCACGGTATCAGTGCAGTATGATTACTATATCTACGGCACAGTCCCACGTGAATCAACTGGATATGACCGGCTGGTGTTGGATCACAGTAGTGATATTTATGCTGTCTCAACAGGTGGAACCAGCCCAAGCGGGGCATCAACAGGCCGCTTCTTGGTGCTGGATACAGGTGATATTAATGGCATCCCAATCCCCCCGCTAGCAACTCAGCTTGGTATTTACAAATCCCGGTTTGATAACTGCACTGCTATTGGTTTCTATTGTCCATTGACTTTGTTGAGCCGTACTGATCGCGCTAATCAAGGTGCTCCTTGGATGCACTCCAACCGATTCGCTGGTTGGGTTACAAAAAACAACGTGGTCGAGTTTGAGGCATTGATTCAGACGGTTACACCGAGAGCCGGGTCATTCACTGATAACAAGATAGAAGATTGGGTAACTCAGCCATACAAGAACTCTCAGCGCATCGCCACCATGGAAGGGGCTGGGTTCAAATTCGTGGACTGTTTCTTCTGGGATCAACACCTCTACCCAGACCAGAGCAAACTGATTGTACTGAGGAAATCAGCCACAGGGGACACAAATTGGATTGAAAGAAATTCTTTCTACAATGACCACAGACCATCACTGGAATTTGTGCGCTGTCCAATCACCAGAAATAAGATTTCTGTCGAGAATATGACGACAAATCTATGGCCTGCTGTCATCAAAATCACCGATAAATTTGGCAATGGAGATTGTGTCGGTGATATACCCATACTTAGTAACATTACAACAGGGACCAATATATCGAGGTTCATGGCTGTTAACTTCACTACACCGCAGACGGTCGGTGCTGTAGCGCAGTGTACATTCAAAATTAAATCAAAATGGCCGTTAGCTACCGACCCATTCCGGGGGGCCATCTACGCCATTGACATTGCTATCAACGTCAAGTTGACTGCTACGGGGTTTGAAGTGAAAACGCACTTGCTAACACCTTACACAGGAATCAAAACAGGTATTGATATCTATGCAGATAACCCCCGCCTCGTTAACGGCGAGTACATGTTAGATATTGTTGCATCTCAGAACAGTGTGGCAGCGCCTTTCCCGTCAATACGACTCAATGACAGCCCTTTACAGAACGGGGACTGGCAGTTATCTAATTCATACGGTATCATTTTGCCTATTCCGTCTGGCCATGGGGCAACGACACTATCTGACGCTGCGGTGAAGATAGTGGACACGTTAGATCTGATTGCAGCGAATACAGTCATATCAAAGACAACCGCAATCAGCATATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
8715cf255fd43bb984ad78d2e1bf7a6e7049ba78e618f13eab88d59d354df06d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6233
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage PS1 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-04-30 — GenBank