Protein

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Genbank accession
YP_008051125.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARYTRTPVSTLQGINNELAKVELAMEDTLDRKGVTPNYMDANLDMNSRRILNLPAPLTDQEPLRKGDIPTGLSVSSQYVDDAIKGLTEVYTLRVSDTEELKSLDVSTGRVGERIRVNEYHEGTGYGGGTWEISTTATPNGMDILESTYDPSVKFVLSVESYHDITNLGFQINEPSSDAGVYVQRVMDADFYLKMDTVLPEGNVYWGTSVYLYAKPAKILGKGMQRTTIIPSSSLLFDTDRIPSGIDSPEEYEVNALIISLRINGESGSTTSTQRDLLVGGFSYDAEGTGYERLVHIVFSGGQSHSEFSNIYHRASNSVYYAHCLSDGASRHFYITFKHLRGQDSNHQVTTNWQPDSGLGTQMGSTWNFEDCSGGKYRKSPYDLNGVLYSNAQNSSADNVYKGSYVWDIKNSNVTLTGCAVESRYEFRDDANTGSGLIRCYDSDVTVNGGNYIGGDSSGDGTGSISDYDDGSGNVSGSLIICESSGGGSTLNLVGAQVNMRSGSQQADRFPVMSKGSRSVVRYSTTFNLWQADDLVCESGGKGVVLDIDGNITLKDDTSGRLITQDILSTDLNLLVADTGDTRQDYNLFTLAGNGSIANGVYYRANLSPLGGDLTDINWPEVAAGFGVVRLVLSGTYGYLEVQQLNGNLWRATTSNAASSFSSWYRISNVPEV
Physico‐chemical
properties
protein length:673 AA
molecular weight: 73173,72500 Da
isoelectric point:4,64218
aromaticity:0,09064
hydropathy:-0,37593

Domains

Domains [InterPro]
DC_2003
STR
1–662
DC_2003
Coil
Unmapped
12–32
Coil
YP_008051125.1
1 673
Architecture
STR
STR 1-662 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008051125.1
1 673
Domain Start End Length (AA) Confidence
N-terminal 1 179 179 0,9923
Central domain 180 550 372 0,9830
C-terminal 551 673 122 0,9141
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-179
Central
180-550
C-terminal
551-673

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage RIO-1
[NCBI] 		1316739 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas marina CL-E25
[NCBI] 		45101 Pisuviricota > Pisoniviricetes > Picornavirales > Picornaviridae > Enterovirus > Enterovirus betacoxsackie

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008051125.1 [NCBI]
Genbank nucleotide accession
NC_021300 [NCBI]
CDS location
range 41020 -> 43041
strand -
CDS
ATGGCACGTTATACACGTACACCCGTTAGTACCCTACAAGGTATTAATAACGAACTAGCTAAGGTTGAGCTAGCAATGGAAGATACTCTTGACCGCAAGGGTGTTACTCCTAATTACATGGATGCTAATCTTGATATGAACTCAAGACGTATCCTTAATCTCCCAGCCCCTTTAACTGACCAAGAGCCTCTACGTAAAGGGGATATACCTACAGGGTTAAGCGTAAGTTCTCAATACGTGGATGACGCTATTAAAGGGTTAACTGAAGTATATACCCTCCGGGTTTCAGATACGGAGGAGCTTAAGTCTTTAGATGTCAGCACCGGTAGGGTAGGTGAACGTATCCGTGTGAATGAGTATCACGAAGGGACTGGCTACGGAGGGGGTACATGGGAGATCTCTACAACAGCTACACCTAACGGCATGGATATACTAGAGAGTACCTACGATCCTTCTGTTAAATTCGTCTTATCTGTAGAGTCTTATCACGACATAACAAACCTAGGTTTCCAGATAAACGAGCCATCTAGTGACGCGGGTGTTTATGTACAAAGGGTTATGGATGCAGACTTCTACCTTAAGATGGATACTGTACTTCCAGAGGGTAATGTATACTGGGGTACGTCGGTTTACCTGTACGCGAAGCCTGCTAAGATTTTAGGTAAAGGGATGCAGAGAACTACAATCATCCCGTCCTCCTCTCTTTTGTTTGATACCGACAGAATCCCCTCAGGGATAGACTCTCCTGAAGAGTACGAGGTTAACGCTTTAATTATCAGCCTGCGTATAAACGGGGAGTCCGGCAGTACTACCTCCACCCAGAGGGACTTATTAGTAGGGGGCTTCAGTTACGACGCAGAGGGGACGGGTTATGAGCGTTTAGTTCATATTGTTTTTAGTGGAGGGCAGTCTCACTCTGAGTTCAGCAATATATACCACAGGGCGTCAAACTCTGTTTACTACGCTCACTGTTTATCAGACGGGGCTAGCAGACACTTCTACATAACATTTAAGCACTTACGAGGTCAGGATTCTAACCACCAAGTTACAACTAACTGGCAACCAGACTCGGGTTTAGGTACGCAGATGGGGTCAACTTGGAACTTTGAGGATTGCTCTGGCGGTAAATACAGGAAGTCCCCTTACGACCTTAACGGGGTTCTTTACTCTAATGCTCAAAACTCCAGCGCGGATAACGTCTACAAGGGTAGCTATGTTTGGGATATTAAAAACTCAAACGTGACGTTAACAGGTTGTGCGGTAGAAAGCAGGTATGAGTTCAGAGATGATGCTAACACAGGTTCTGGATTAATTAGATGTTATGATTCAGACGTTACTGTTAACGGAGGTAACTACATAGGAGGTGACTCGTCAGGAGACGGGACTGGATCTATATCGGACTACGATGACGGGTCAGGCAATGTTTCTGGTAGCTTAATTATATGTGAAAGCTCAGGAGGCGGTAGTACTCTAAACCTTGTCGGTGCGCAGGTTAACATGAGGTCTGGGTCGCAGCAAGCGGATAGGTTCCCTGTTATGTCTAAGGGGAGTCGATCCGTAGTAAGGTACTCTACAACGTTTAACTTATGGCAAGCGGACGACCTAGTCTGTGAGAGCGGAGGTAAGGGGGTAGTCCTAGACATCGACGGAAACATTACATTAAAAGATGACACGTCTGGACGATTAATTACTCAAGATATATTAAGCACTGACTTAAACCTGCTAGTCGCCGATACCGGAGACACCAGACAAGATTATAACCTTTTTACCCTAGCAGGTAACGGTTCAATAGCTAACGGTGTTTACTACAGGGCTAACTTATCTCCATTGGGAGGGGACCTCACGGATATAAACTGGCCTGAGGTAGCCGCAGGGTTTGGGGTTGTTCGATTAGTACTCTCTGGCACCTACGGTTACTTAGAAGTTCAGCAGTTAAATGGCAACTTGTGGAGAGCTACTACCTCTAACGCAGCTTCTTCTTTCAGTTCTTGGTATAGAATTAGTAACGTACCGGAGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3857a18a42512f0038ce9a29fc58e9e1e8a05f9f7b6c282f6fd8e2629e0cd3bc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7161
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50