Protein

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Genbank accession
XAO54576.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATLKQIQFKRSKVAGVRPAPTVLAEGELAINLKDRLLFTKDDTGAIIDLGFAKGGNIDGNVIHNGNYNQTGDYALKGAFTQTGSYATSGSVTADGDITAKSRLMTDNGEVLVRGTGTAHVRFQDLADARERGIIYSQSRPGNTKQILNVRVQDYTNSTSNIFAFNGDGLFYAPSISGGTSVKSPVIYTNTVDTGNKSALDYDISSLANNNPASSSATSINYLRISRHAVDGIRYRELNNVNGISWHSISTAGTAKYLWSFNADGDVKTSNSLSVGLPGDSSGYSTLGPSAIALGDNNTGLKWRQDGQFHTVNNGAYTLLTTPTEVTSLKQLVAGYSTNGSDLILPTAQNYPLVIVNTTNDKNGFGDGQTLLGYHQSGKYHHYFRGKGVTNVNTTGGLLVTPGNIDVRGGLIAIDGQASSSSLVFKGNTSGQSSVDDMRLSVWGNTFNTVDGTRKNIMEISDVTGTMHYIQRDTDGKVTSRLNGFMDIADGIVVAQDATLKRNLYVSNEIKVRGASGLRIWNDKYGVIFRNSEDNLHIIPTNINAGESGGLGPLRPLSIVLGTGQVKIPNLAADQVSFIANSVLEFPAGNGASYANQNTTKAPLYQTLGAATQAFYPITKQKNTVSNVTITQGMDRTTSEYRIVAQGDLLGDGDATGLKYWRFTKEGNFMAQNRLYAGTAFMNTDGNIAGSIWNKYSGSTNLDAAVNTRVGKGGDTMTGRLTLKTNSDAIVIDYPADEAGYVKGKKGGVDNWYVGNGGADNGLAFWSFQSQGGININPNGEVILSPQGTSIFNINRDRIHMNGAQWIARHSGAWADQWREEAPYFLDFSSVGEDSYYPIIKGKSVITGQGYTTSVELGIRRTPQAWGQAIIRVGNAERGDGPVGIFEFHSSGLFYSPTLIQTPAIGVGTVNGLGAPSIAIGDNDTGLSHGGDGRVNMVANGVHIASWSSSYHIHQGLWDTTGALWTEQGRAIMSYGHLVQANDSYSTYVRDVYVRSDIRVKKDLVKFENASDKLSKINGYTYMQKRGTDEEGNQKWEPNAGLIAQEVQAILPELVEGDPDGEALLRLNYNGVIGLNTAAINEHTAEIAELKSEIEELKALVKSLLK
Physico‐chemical
properties
protein length:1106 AA
molecular weight: 118743,59980 Da
isoelectric point:6,20781
aromaticity:0,08318
hydropathy:-0,33264

Domains

Domains [InterPro]
DC_0538
STR
1–708
DC_0538 G3DSA:6.20.80.10 IPR030392 Coil
IPR048390
ATT
450–559
IPR048390 DC_0339
IPR030392
CHP
996–1094
IPR030392
DC_2193
RBD
1030–1106
DC_2193
XAO54576.1
1 1106
Architecture
STR
ATT
STR
RBD
STR 1-449 | ATT 450-559 | STR 560-1051 | RBD 1052-1106
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAO54576.1
1 1106
Domain Start End Length (AA) Confidence
N-terminal 1 614 614 0,0663
Central domain 615 813 200 0,2673
C-terminal 814 1106 292 0,8781
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-614
Central
615-813
C-terminal
814-1106

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_YenM_P8
[NCBI] 		3141560 Viruses >
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAO54576.1 [NCBI]
Genbank nucleotide accession
PP693301.1 [NCBI]
CDS location
range 125977 -> 129297
strand -
CDS
ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGTAAGGTTGCCGGCGTTCGCCCGGCGCCAACAGTTCTTGCTGAAGGTGAACTGGCTATCAACCTGAAAGACCGCTTACTTTTTACTAAAGATGACACCGGCGCCATTATCGACCTTGGCTTTGCCAAAGGCGGTAATATCGACGGAAACGTTATTCATAACGGTAACTACAATCAAACCGGTGATTATGCTCTGAAGGGTGCTTTTACCCAAACAGGTAGTTATGCGACATCCGGAAGTGTAACAGCAGATGGTGATATCACAGCAAAATCTCGCCTAATGACAGATAACGGTGAAGTTCTTGTACGGGGTACAGGAACCGCCCACGTTCGATTCCAGGATTTGGCTGATGCGCGTGAAAGAGGCATAATTTATTCACAATCACGCCCAGGAAATACCAAGCAAATCTTGAACGTTCGTGTTCAGGATTATACTAATTCAACATCTAATATTTTTGCATTCAACGGTGACGGTTTATTTTATGCTCCATCTATTTCCGGTGGAACATCGGTAAAATCTCCGGTAATTTATACTAATACCGTTGATACCGGTAATAAATCAGCTCTTGATTATGATATATCTTCATTGGCAAATAATAATCCTGCAAGTTCAAGCGCAACATCTATTAACTATCTTAGAATAAGTAGACATGCTGTCGATGGAATTAGGTATCGTGAACTTAATAATGTAAATGGTATTTCATGGCATTCTATTTCTACAGCCGGAACAGCTAAGTATCTTTGGTCATTTAATGCAGATGGCGATGTCAAAACATCAAATTCTCTTTCCGTTGGCCTACCTGGGGATAGCTCAGGATACTCAACATTAGGTCCGTCTGCTATCGCACTTGGCGACAATAACACAGGTTTGAAATGGAGACAAGACGGCCAGTTCCATACAGTTAATAATGGAGCTTATACTTTACTTACAACTCCGACTGAAGTTACAAGCCTTAAACAGTTAGTTGCGGGTTATTCAACCAACGGTTCTGATTTAATTCTCCCTACAGCCCAAAACTATCCATTAGTTATTGTTAATACTACTAATGATAAAAACGGCTTCGGTGACGGTCAAACTCTTTTAGGTTATCATCAGAGTGGTAAATACCACCATTATTTCCGTGGTAAAGGCGTAACAAACGTTAACACTACAGGTGGATTGTTGGTTACTCCTGGAAATATTGATGTTCGTGGCGGACTAATTGCTATTGATGGGCAAGCTAGTTCATCTTCTTTGGTGTTTAAAGGAAATACATCAGGGCAAAGTTCTGTTGATGATATGAGGCTTTCTGTGTGGGGTAACACCTTTAATACAGTAGATGGTACTCGTAAAAACATAATGGAAATATCTGATGTCACTGGCACAATGCATTATATCCAACGTGACACCGATGGAAAAGTTACCTCTAGATTGAACGGCTTCATGGATATAGCAGATGGTATTGTGGTTGCTCAAGATGCAACCTTAAAACGCAATCTGTATGTTTCTAATGAAATTAAAGTTCGCGGTGCTAGTGGACTTCGTATTTGGAACGATAAGTATGGTGTTATTTTCCGAAATTCAGAAGACAACCTGCATATTATTCCAACCAATATTAATGCCGGTGAAAGTGGTGGATTAGGTCCATTACGCCCATTAAGTATTGTATTGGGTACTGGTCAAGTTAAAATCCCTAATTTAGCGGCTGACCAAGTTTCTTTTATTGCTAACAGCGTATTAGAATTCCCTGCTGGTAATGGTGCATCTTATGCCAACCAGAATACGACTAAAGCTCCGTTGTATCAAACACTTGGTGCAGCAACCCAAGCATTCTATCCAATTACCAAGCAGAAAAATACAGTTTCTAATGTAACTATTACTCAAGGTATGGACCGAACTACAAGCGAATACCGAATTGTTGCTCAAGGCGATTTGCTTGGTGATGGTGATGCTACAGGATTAAAATATTGGCGCTTTACCAAAGAAGGTAACTTCATGGCTCAGAACCGCTTATATGCTGGTACAGCTTTCATGAATACCGATGGTAATATTGCTGGTTCTATTTGGAATAAGTATAGTGGTTCTACTAACCTTGATGCAGCGGTGAATACTCGTGTCGGTAAAGGCGGGGACACAATGACAGGCCGCTTAACTCTTAAAACCAATTCAGACGCTATTGTTATTGATTATCCGGCAGATGAAGCGGGTTATGTTAAGGGTAAAAAAGGTGGTGTTGATAACTGGTATGTAGGTAATGGTGGTGCTGATAACGGTTTAGCCTTCTGGAGCTTCCAATCTCAAGGTGGTATTAATATCAACCCTAATGGCGAAGTTATTCTATCTCCACAAGGTACTAGTATATTCAATATAAACCGTGACCGAATTCATATGAACGGTGCCCAGTGGATTGCACGACATTCTGGTGCTTGGGCCGACCAATGGCGTGAAGAAGCACCTTATTTCCTTGATTTCAGTTCGGTAGGTGAAGACAGTTATTACCCTATTATTAAAGGTAAATCAGTAATTACTGGTCAAGGGTATACTACTTCTGTTGAACTTGGTATTAGACGTACACCTCAAGCCTGGGGACAAGCGATAATTCGAGTAGGTAATGCCGAGCGTGGCGACGGCCCTGTAGGTATTTTTGAATTCCATTCTAGTGGACTATTCTACAGCCCTACTTTGATTCAAACTCCTGCAATCGGTGTTGGTACTGTTAATGGACTTGGTGCCCCGAGTATCGCAATTGGTGATAACGATACAGGCTTATCACACGGTGGTGATGGCCGAGTTAATATGGTTGCCAATGGTGTTCATATTGCTTCATGGTCCAGCTCATACCATATCCATCAAGGTCTTTGGGATACCACTGGCGCTTTATGGACTGAGCAAGGAAGAGCTATTATGTCTTATGGTCATCTTGTTCAGGCAAACGACAGCTATTCTACATATGTCCGTGACGTTTATGTCCGTTCTGATATTCGTGTTAAAAAGGACCTCGTTAAATTTGAAAATGCTTCTGATAAGCTTTCTAAAATTAACGGTTACACTTATATGCAGAAACGTGGAACTGACGAAGAAGGTAATCAGAAATGGGAACCTAACGCGGGTTTAATTGCTCAAGAAGTTCAAGCTATTTTACCGGAATTAGTTGAAGGCGACCCTGATGGTGAAGCTTTACTTCGTTTGAACTATAACGGTGTAATTGGTTTAAATACAGCTGCAATCAATGAGCACACTGCCGAAATAGCAGAATTGAAATCAGAGATTGAAGAACTTAAAGCTTTAGTTAAATCATTGTTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d7fbd3ccea15d75b83b67b4a48b642c82f2e21a68a03202a17c85fba8775e5c1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5401
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Yersinia phage vB_YenM_P8 Hammerl,J.A. 2003-08 — GenBank