Protein

View in Explore
Genbank accession
YP_009847625.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MPTFRVRGIGKVGTIKDLPPFELPPEAWSTSNNVRFVGGRVEKMGGMLPVLTTNMPDETPLCVFQKSNTNSVIYGTPTSIYRIDGISHFKISRNLSTTPGQEDFYVYGASPEDRWYYTSLSNSIIMNYKGDNPQGLRPTDDYFVNLPGWGIPSKEGVQKTWRCGRIRAFRNYLIALDMVEDGVELPQRVRWSNVSFVNELPPDWVEDDDKKDGGFNDLTDSIGKIVDGHPLRDSFVVYTDKDTYLMDYVGGVFIFNFRKLFSDSGLLAPNCVAEFEGQHFVVAQDDIFIHNGSSRKPVASGRLKEYLINEISGINSQATQVFSNTSRKEIWITYAGTGSIGADKTGWSCNKAAVWNWEYDTWSFYDLPQVYDINMAPPPETDTLSWDQLCGTEADPPNDSIIPIGCEDVWDSDKWSEEQWQEYGKDFIRRVIYCASKDKCLYLLDTGTEFVDYDSVNKTNNPRPIVAELIRTHLDMDEAVESTRRYKMIRHIVPQFSGTGEVLVFYGGSENSTNPPTWDGYQVYNIEEDVKVDSWSNNRYPAIKFVDSSGGTWSFTGYDIDFIQEGLR
Physico‐chemical
properties
protein length:568 AA
molecular weight: 64493,17900 Da
isoelectric point:4,67838
aromaticity:0,12676
hydropathy:-0,48081

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009847625.1
1 568
Domain Start End Length (AA) Confidence
N-terminal 1 96 96 0,7850
Central domain 97 310 215 0,1198
C-terminal 311 568 257 0,7409
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-96
Central
97-310
C-terminal
311-568

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage LAh_9
[NCBI] 		2591033 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009847625.1 [NCBI]
Genbank nucleotide accession
NC_048776.1 [NCBI]
CDS location
range 94713 -> 96419
strand -
CDS
ATGCCAACGTTTAGAGTTAGGGGTATTGGTAAGGTGGGTACTATTAAAGATCTGCCACCATTTGAACTACCCCCAGAGGCATGGTCTACCTCCAATAATGTCAGATTTGTTGGTGGGAGGGTTGAAAAGATGGGGGGTATGCTCCCCGTCTTAACAACAAATATGCCAGATGAAACACCTTTGTGTGTTTTTCAGAAAAGCAACACGAACTCTGTTATATATGGTACTCCTACTTCTATTTACAGAATAGATGGTATTTCACATTTTAAAATAAGTAGAAATCTAAGTACGACCCCAGGTCAAGAAGATTTTTATGTGTATGGGGCTTCACCAGAGGATAGATGGTACTACACCTCCCTATCGAACTCTATCATAATGAATTATAAAGGCGATAACCCTCAAGGACTAAGACCAACGGATGATTACTTTGTCAATCTACCTGGGTGGGGAATCCCTTCAAAAGAAGGTGTTCAGAAAACATGGAGATGTGGTAGAATCAGGGCATTTAGAAACTACCTCATTGCCCTTGATATGGTTGAGGATGGTGTTGAGCTACCTCAGCGTGTAAGGTGGTCTAACGTATCTTTCGTTAATGAGTTACCACCTGACTGGGTTGAGGATGATGATAAGAAAGATGGTGGTTTTAATGATTTAACTGATTCTATTGGTAAAATTGTAGATGGCCACCCGTTAAGAGATAGTTTTGTTGTATACACAGACAAAGACACATATTTGATGGACTATGTGGGTGGTGTCTTTATATTTAACTTCAGGAAATTATTTAGTGACTCAGGTCTTCTTGCACCTAACTGTGTGGCTGAGTTTGAAGGGCAGCACTTTGTTGTTGCTCAGGATGACATCTTTATCCATAATGGATCTTCCAGAAAACCAGTAGCATCTGGTAGGTTGAAAGAGTATTTAATTAATGAAATCTCTGGAATCAACTCTCAAGCTACTCAAGTTTTTTCAAACACCTCTAGAAAGGAAATCTGGATAACTTATGCAGGTACTGGATCTATTGGTGCAGATAAAACTGGTTGGTCTTGCAATAAGGCTGCCGTTTGGAACTGGGAATATGATACTTGGTCATTTTATGATTTGCCACAAGTTTATGATATAAACATGGCTCCGCCTCCAGAAACAGATACATTGAGTTGGGATCAATTATGTGGTACAGAGGCTGATCCACCGAATGATAGCATAATCCCAATTGGTTGTGAGGATGTATGGGATTCTGATAAGTGGTCTGAGGAGCAGTGGCAGGAATATGGAAAGGATTTTATTAGAAGGGTTATTTATTGTGCAAGTAAAGACAAGTGTTTGTACTTATTAGACACAGGTACTGAGTTTGTTGACTATGACAGTGTTAATAAAACCAATAACCCTCGTCCAATCGTTGCCGAGCTTATCAGAACTCACTTAGACATGGATGAAGCAGTTGAATCAACGAGAAGATATAAAATGATAAGGCATATAGTTCCACAATTTTCTGGAACTGGTGAAGTCTTAGTGTTTTATGGTGGATCAGAAAACTCTACAAATCCACCAACTTGGGATGGGTATCAAGTCTATAACATAGAAGAAGATGTTAAAGTAGATTCTTGGTCTAATAACAGGTATCCAGCTATCAAATTTGTGGATTCATCTGGTGGCACTTGGTCTTTCACTGGGTACGACATTGATTTTATCCAGGAAGGTTTACGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0cd7b6af0885d051f49d8ac5b6d67205c2d579e0e5fec67c0ae4d58d8297c790
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8531
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages capable of disrupting biofilms from clinical strains of Aeromonas hydrophila with intrinsic antibiotic resistance Kabwe,M., Brown,T.L., Speirs,L., Ku,H., Leach,M., Chan,H.T., Petrovski,S., Lock,P. and Tucci,J. 2020-02-14 — GenBank