Protein

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Genbank accession
YP_010672681.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MSRELMPKSGIMMPHVVINRDAAVVGVSTVDGVAGAVNLTDKYLQKTDAASTYLTRAEGATKTFVTDAIGPIMSGALFKDDPVVANDVAFRSGGANGVESVDMIKVTPENTIKLGSYASSVQGVEIHSAGRLQVVDQNDSGVETKYPVYSKRYRPEIEDLPFAAIGSYVKDSKGRTIGVTRTGINSDIKQLTQKVTFTQPVTVADGVGDYDAVTMRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVVSDGQLLNRADYPDLWAYAQLLTPISDAAWLADAQQRGKYSTGDGTTTFRVPDRNGVQAGSLKELFARGDGGNSSNNGMMYDAALPNIVGYTAHTLLTASSSQGQVATDGAFTSTTSTQGVWPVSGGGGLYTNIRFDANQSDPTYGRYGITSNVIPRNFIGVWTIRAHGGFTAANTSWSVIDSDSTEPASGTVVRGGSVKSEYKIGTSPKYQAYLQAYGKIGGLAIDRGAVLSNGVQEWFFNQDGTLYFPDAETQIGTLRSDGALHISAYVRPKDVVVNPLNSVGVAASERNAVRMINYANVPEGGYINSVGGDWYDGNWMLGGVRSGTTALDRAQLNILNGIGSSASYIFGSDGIARCQEWRSTSDERIKSNIERISDPLSKMKNIKGVTWVLETNGSVGYGFIAQDVEKDFPEAVSEIKASPVTLRDGSVLDNVKSVNTSGVAAALHHEAILELMKQVEDLKKEVSELKSSK
Physico‐chemical
properties
protein length:729 AA
molecular weight: 77679,75060 Da
isoelectric point:5,49658
aromaticity:0,07956
hydropathy:-0,24540

Domains

Domains [InterPro]
DC_1514
STR
20–339
DC_1514 DC_1985
SSF88874
STR
255–424
SSF88874 IPR030392
DC_2049
STR
315–440
DC_2049 IPR030392 Coil
YP_010672681.1
1 729
Architecture
STR
RBD
STR 20-440 | RBD 441-729
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010672681.1
1 729
Domain Start End Length (AA) Confidence
N-terminal 1 442 442 0,2826
Central domain 443 641 200 0,2273
C-terminal 642 729 87 0,9945
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-442
Central
443-641
C-terminal
642-729

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EP335
[NCBI] 		2070199 Uroviricota > Caudoviricetes > Mktvariviridae > Nieuwekanaalvirus > Nieuwekanaalvirus EP335
Host Escherichia sp.
[NCBI] 		1884818 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010672681.1 [NCBI]
Genbank nucleotide accession
NC_070979.1 [NCBI]
CDS location
range 12807 -> 14996
strand +
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGCATAATGATGCCTCATGTTGTTATTAACCGAGATGCTGCGGTGGTGGGTGTCTCAACTGTTGATGGTGTTGCTGGTGCGGTTAATCTGACTGATAAATATTTACAGAAAACAGATGCAGCTTCTACTTATTTAACTAGAGCCGAAGGTGCTACTAAAACTTTTGTAACAGATGCAATTGGACCTATCATGTCTGGTGCACTGTTTAAAGATGACCCTGTTGTTGCAAATGATGTAGCTTTCCGTTCAGGTGGAGCTAATGGTGTAGAATCTGTGGATATGATTAAAGTCACTCCAGAGAATACTATCAAACTTGGTAGTTATGCATCTTCTGTTCAGGGAGTAGAGATTCACTCAGCTGGTCGTCTTCAGGTTGTTGATCAGAATGACAGTGGTGTAGAAACTAAATACCCTGTTTATTCTAAACGGTATCGTCCTGAGATTGAAGATTTACCTTTTGCTGCAATTGGGTCTTATGTTAAGGATTCTAAAGGTCGTACTATTGGTGTTACTCGTACTGGTATCAACTCTGATATCAAACAGCTTACACAGAAAGTCACATTTACTCAGCCTGTAACTGTAGCAGATGGTGTTGGGGACTACGATGCTGTAACAATGAGGCAGCTGCGTAATAGTGGTGGTGGCTCTGGTGGTCCTACCATGAGTGGTATTTCTAACTTTGGTATTGGTGATTTTCACCTACGTGACAGTCGTGCTTTCATCCCCGCTTTTGAGGTAGTCTCTGACGGGCAGCTTTTGAATCGCGCTGACTACCCTGATTTATGGGCTTATGCTCAACTCTTAACTCCAATCAGTGACGCTGCTTGGTTGGCGGATGCACAGCAGAGAGGTAAATACTCTACTGGTGATGGTACAACCACTTTCAGGGTTCCGGATAGAAACGGCGTACAAGCAGGATCTCTTAAAGAACTGTTTGCCCGTGGTGACGGTGGTAATTCTTCTAATAACGGTATGATGTATGATGCAGCTCTTCCTAATATCGTGGGCTATACCGCACATACTCTGCTAACAGCGTCTAGCTCTCAAGGACAGGTGGCAACTGATGGAGCTTTCACTTCAACCACATCAACCCAAGGTGTATGGCCTGTTAGTGGGGGGGGTGGTCTTTATACTAACATTCGTTTTGATGCTAATCAATCTGATCCTACCTATGGTAGATATGGAATTACATCAAACGTAATACCTCGTAACTTTATAGGTGTTTGGACTATTCGTGCGCATGGTGGTTTTACTGCTGCTAATACTTCTTGGTCTGTTATTGATAGTGACTCGACAGAGCCTGCATCCGGAACAGTTGTTAGGGGCGGTAGTGTCAAATCTGAATACAAGATTGGTACAAGCCCAAAATATCAAGCATATCTTCAGGCATATGGGAAAATTGGTGGGTTAGCAATTGACCGAGGTGCAGTTCTATCAAACGGGGTACAGGAGTGGTTCTTTAATCAAGATGGGACTTTGTATTTCCCAGACGCAGAGACGCAAATTGGTACATTAAGGTCTGATGGCGCGTTACATATTAGCGCATACGTCAGGCCAAAGGATGTCGTTGTAAATCCATTAAACTCTGTTGGGGTTGCAGCTTCAGAAAGAAACGCCGTCAGAATGATCAACTACGCAAATGTACCAGAAGGGGGTTATATTAACTCAGTTGGTGGCGACTGGTATGATGGGAATTGGATGCTCGGCGGAGTCAGAAGTGGCACAACAGCATTGGACCGTGCGCAACTTAACATTTTGAATGGCATTGGCAGCAGCGCCTCGTATATATTTGGCTCTGATGGTATAGCAAGATGTCAAGAATGGAGAAGTACATCTGATGAACGGATTAAAAGCAATATTGAGCGTATCAGTGATCCACTCTCCAAGATGAAAAACATCAAGGGGGTTACGTGGGTTCTGGAAACCAACGGCTCGGTAGGGTACGGATTCATCGCACAGGACGTAGAGAAGGATTTTCCTGAAGCTGTATCAGAAATAAAGGCTTCACCAGTCACTCTGCGAGACGGGTCTGTGTTGGACAATGTAAAGTCAGTTAACACCTCGGGAGTTGCTGCTGCGTTGCACCATGAAGCTATTCTTGAACTTATGAAGCAGGTTGAAGATCTTAAGAAAGAGGTGTCAGAGCTTAAGTCTAGTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1f680768c240567aa4044de63a8729c5a0bfbbf9d9c9ff4819619698dd5a246a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6011
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50