Protein

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Genbank accession
QPO17486.1 [GenBank]
Protein name
lysin A
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAGRDLVVVLMAVLRTNVEFAKRIFQDRVGNDYVYGGNWNPFNLKVGTDCSGLVIDICDAVRNGTAMAWTRHGMSTESWRPIEVGQTGTIFNTICVASPNDFPADAAVKIAIHHGPGGGANSHMWCEVEGIRMESNGSDGCVTGNQARSVYDTSYANDWHYLPGPITGQVGVDPAGVLARATGLSVARASQILPAVSDGLKASQCTNVNRIAMWLAQVGHESAGFNATEEYASGAAYEGRADLGNTQPGDGVRFKGRSWIQITGRNNYAAFSRWCSGKGLVLSPTEFVDNPNRLAELRWAGIGAAWYWTVARPDINALSDRQDLETVTRRINGGTNGLADRRDRYNRALLQGDALLQLLTEPLDPIEELLMSDLQVESLSIYATPGEPLIPIVRMVQAIDAAEHRKLVEDWARTGDADALSRIARTAAGQGKFRDAATIAHAKAVLADIEATNPAVLQEFISQKGQS
Physico‐chemical
properties
protein length:467 AA
molecular weight: 50413,05100 Da
isoelectric point:5,48101
aromaticity:0,07281
hydropathy:-0,20685

Domains

Domains [InterPro]
DC_1733
ATT
7–170
DC_1733 G3DSA:1.10.530.10
IPR023346
STR
199–349
IPR023346
IPR052354
Unmapped
203–348
IPR052354
IPR023346
STR
205–345
IPR023346 DC_1763
QPO17486.1
1 467
Architecture
ATT
RBD
STR
RBD
ATT 7-170 | RBD 185-198 | STR 199-349 | RBD 350-467
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPO17486.1
1 467
Domain Start End Length (AA) Confidence
N-terminal 1 174 174 0,4382
Central domain 175 373 200 0,5603
C-terminal 374 467 93 0,6165
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-174
Central
175-373
C-terminal
374-467

Taxonomy

  Name Taxonomy ID Lineage
Phage Mycobacterium phage phiGD23-1
[NCBI] 		2794954 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPO17486.1 [NCBI]
Genbank nucleotide accession
MW314855 [NCBI]
CDS location
range 20958 -> 22361
strand +
CDS
GTGGCTGGCCGCGATCTGGTGGTCGTACTGATGGCCGTGCTACGTACGAACGTCGAGTTCGCAAAGCGGATCTTCCAAGACCGTGTCGGCAACGACTACGTCTACGGCGGGAACTGGAATCCGTTCAACCTTAAGGTCGGCACCGACTGCTCCGGTCTCGTCATCGATATCTGTGATGCGGTGCGCAACGGGACCGCGATGGCCTGGACTCGGCATGGGATGTCCACCGAGAGCTGGCGTCCGATTGAAGTAGGGCAGACCGGAACCATCTTCAACACCATATGCGTTGCGTCGCCGAACGACTTTCCGGCTGATGCTGCGGTGAAGATCGCCATCCACCACGGCCCTGGCGGTGGAGCGAATAGCCACATGTGGTGTGAGGTTGAGGGAATCCGCATGGAGTCCAACGGCTCCGATGGGTGTGTGACCGGGAACCAGGCGCGGTCCGTGTACGACACGAGCTATGCGAACGACTGGCACTACCTGCCCGGACCCATCACAGGCCAGGTAGGTGTCGATCCCGCAGGAGTGCTGGCACGTGCCACCGGGCTAAGTGTCGCGAGGGCTTCGCAGATCCTACCCGCGGTGTCGGACGGGCTCAAGGCTAGTCAGTGCACGAACGTCAATCGGATCGCGATGTGGCTGGCGCAGGTCGGCCACGAGTCAGCCGGCTTCAATGCCACCGAAGAGTATGCCTCCGGTGCCGCCTATGAAGGGCGTGCAGATCTGGGTAACACCCAACCCGGGGATGGGGTGCGGTTCAAGGGCCGCAGCTGGATTCAGATCACCGGCCGCAACAACTACGCAGCGTTCTCGCGGTGGTGTTCGGGTAAAGGACTCGTTCTGTCGCCAACGGAATTCGTTGATAACCCGAACCGACTGGCCGAACTGCGGTGGGCCGGTATAGGTGCGGCTTGGTACTGGACGGTCGCCCGCCCGGACATCAACGCCCTGTCGGATCGGCAGGACTTAGAGACCGTCACGCGCCGAATCAACGGCGGCACCAACGGCTTGGCTGATCGTCGCGACCGATACAACCGCGCCCTACTCCAGGGCGATGCGCTTCTGCAACTACTCACTGAACCGCTGGACCCGATTGAGGAGCTACTGATGTCAGACCTTCAGGTCGAATCCCTATCCATCTACGCCACCCCAGGTGAGCCGTTGATCCCGATTGTTCGCATGGTGCAGGCCATCGACGCCGCGGAGCACCGCAAGCTCGTCGAGGACTGGGCGCGCACCGGGGATGCAGACGCACTATCCCGTATCGCCCGCACCGCGGCGGGGCAAGGGAAGTTCCGTGACGCCGCCACCATCGCACACGCCAAAGCCGTGCTCGCTGACATTGAAGCCACTAACCCTGCAGTCCTGCAGGAGTTCATCTCTCAGAAGGGACAATCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
22cc9ba6514d1c4a958237005ce29e23356ea74525dc865746e934563d6821a3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8064
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50