Protein

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Genbank accession
YP_010747706.1 [GenBank]
Protein name
putative tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MALVIHYTRNEDGTFDVKRYRDNPMNFVVNHVPDGVPVRVFIDEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSPTDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGKIVEYGYYDAGRGYLDIHPEGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVVSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSVPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIANAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGVKTETYDSKGIRNYKQAFWAAHRRHQKNILKKISVSFTATEEGIFALPNRAVSVVKGSRMATYDGYITAVNGLTVELSQPVKFTAGDDHSLILKLRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGSAFSNGFDNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93743,68830 Da
isoelectric point:5,26280
aromaticity:0,09742
hydropathy:-0,35810

Domains

Domains [InterPro]
DC_0118
STR
1–685
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
YP_010747706.1
1 852
Architecture
STR
RBD
STR 1-685 | RBD 703-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010747706.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 230 230 0,9664
Central domain 231 429 200 0,6381
C-terminal 430 852 422 0,1564
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-230
Central
231-429
C-terminal
430-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage dunkel
[NCBI] 		2713293 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus dunkel
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010747706.1 [NCBI]
Genbank nucleotide accession
NC_073201 [NCBI]
CDS location
range 27145 -> 29703
strand +
CDS
TTGGCGCTAGTAATACACTACACACGAAACGAAGACGGCACATTTGACGTCAAACGTTACCGCGATAATCCGATGAACTTCGTCGTGAACCACGTTCCAGACGGGGTGCCGGTTCGCGTTTTCATCGACGAAATCGGAGAAGATAACGATGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTGGAATCCGCGGGTGGTGGCGCTATTAAAGGCGTCATGAAGATTTTTAGCGTTATTCTTAAACCGTTGGCGAAGCTCTTGTCGCCGTCTGTGAAAGGGGCGTCATCGAACCTTGCGAACTCGCAGGCGGATTCCCCAAACAACAGTCCTACTGACCGTAACAACAAGGCGCGCCCGTACGAGCGCAGCTACGACATCTGCGGGACGGTGCAAACAATACCCAATAACCTTATGTCTACTTATAAGGTGTTCAACGCCGCTGGTAAAATTGTAGAGTACGGCTATTACGACGCCGGGCGCGGCTACCTCGACATCCACCCTGAAGGTATAACGGACGGTGATACCCGGGTATCGGATATAACAGGTACGTCGGTTGCCGTGTACGCACCATATACATCACCCAATAACACATCTACACCGCAGGTCATGGTTGGGGACCCCATAGAGCAAGGCCTATACATTACCGTAGAATCTAACGAAGTTGACGGCGTGGTTCTTAAAGCACCGAACGGTCTGGGCATTTCTTTCTCTTACATGTCCGGGTATCCGTCTTTGTCCGGAAACATTGGCACGATATATGACCCAACAGGTGGTTCGGATTTTTCTGGGGTACTGGTGCCTAATGATACATTTTCGCTGGTGTCAGCGTGGACAAATACGGACGTTGACCTCTCCGGCGGCGGATATCAGGTAGTCAGCGTGTCCGAAGGGACCGTTACCTTTATCGTGCCTGGCGGCCTTATCGGGCGATGGCAAGAAATAAGACCCGGTTCATTTTTCCGCGGTGACGGAGAGGCGTCGCTGCAACCGGATAATACATACGAGAAAACATTAACCGATTGGGTGTCTATAAACCGCACCGAGGTTGAGCGCATAGTCGCCAATATCGCTGCTGCCAATGGCATGTATAAAGACAACGGCAAGTCAAAAACACTGGCATCCGTTACCGCTGAGATACAGTACCAGCTACTTGATGAAAATAGCGTTCCTTACGGGCCAATATACACGGCGCAAGGAACTGTGTCCGGGCGTACACCGGACTACAACGGCGTCACTATTTACGCCGACCTGCCGGTTGTGTCACGGGTTCGGGTGCGCGCCAGAAGGGTGACAGACCTCGACTTTAATTTCGAGGGGTCCGTAGTCGATGAGATAACGTACGTTAACTTATACGGGCAAACACGTGACAACACCCCACACTACGGCAACAGAACAACAGTACACTCGATGCGCAAGCAGACCCCCCGTGCTGCGGAAGTAAAGCAACCGCAGTTGCGTATGATTGCTACTGAAATGGTGTACAAATACCTCGGTAACGGTGTTTTCGAAGATACGATGACACCTAATACACAGGCTGTACAATCCCTCATCCGCCTGGCGCGTGACCCAGATGTGGGCGGTTTAAACCTGACAGTACGCAACATGGATAAGTTACTTGCCGTGCAGAACGAGGTCGAAGCGTATTTTGGTGACAAGCAAGCGGGGGAATTTTGCTACACGTTCGATGACTATAAAACCACTATGCAGGACATAGTTAGTACTATAGCCAACGCTATCTTCTGTACGCCATACAGGCGTGGGGCGGATATCCTTCTCGATTTTGAACGCCCTCGCATGGGCCCCGAGATGGTGTTCACCCACCGAAGCAAGGCTGGTACTTCCGAAAAATGGACCAGAACCTTTAACGATGCTCAGGTTTTTGACAGCCTTAAATTCTCGTACATAGACCCTAAGACGAACGTCAAAGAAACAATAACAATACCAGAAACTGGTGGGGTTAAAACGGAGACCTACGATTCAAAAGGTATTCGCAACTATAAGCAGGCTTTCTGGGCAGCGCACCGCCGCCACCAGAAGAATATTTTAAAGAAAATTTCAGTGTCGTTTACCGCCACGGAAGAGGGTATTTTTGCCCTTCCGAATCGTGCCGTTAGTGTGGTTAAGGGTTCGCGTATGGCTACCTACGATGGCTACATAACCGCAGTAAACGGGCTCACCGTAGAACTGTCACAACCAGTTAAGTTCACAGCGGGAGATGACCATTCTTTGATTCTCAAGTTACGTGATGGTGGAGTGCAAAGTGTTAATGTAGTCCCTGGAGCGCACGACAGGCAGGTGATTATGACTTCTGTACCGCAGGAAGCCATTTACACAGGTAATAGTGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGACCCTGGCGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTACCTCCTTTCGGTAGTGCGTTCTCCAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
eaba2ef87093434739550b7d28a4638af44d3c02d74e382a8d9ee16da1bd0007
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2945
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential Olsen,N.S., Hendriksen,N.B., Hansen,L.H. and Kot,W. 2020 — GenBank