Protein

View in Explore
Genbank accession
WPK35504.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MATLKQIQFKRSKTAGARPAASVLAEGELAINLKDRTLFTKDDSGNIIDLSISAGGNISGNVTIDGTLRVNGPINNFGNFSTSGQITAGSSISAQVFRALQGSFYSRASTGETANAHLWFENADGTERGVIYARPQTTTDGEIRLRVRQGTGSTVNSEFYFRSINGGEFQANRILASDSLVTKRIAADTVIHGGKAFGVYDTDSLVNYVYPGTGETNGVNYLRKVRAKSGGTMYHEIVTAQTDQADEVSWWTGNTPSFKLYGIRNDGRMIVRNSIAIGTVTAGYPSSDYGNGAALGFGVYLALGDNGTGLSYKKTGVYDLVGSGNSVASITPDSFRSTRKAIFGRSEDQGTTWIMPGTNAAFLSVQTQADENTAGDGQTHIGYNSGGKMSHYFRGKGQTNINTQEGMEVNPGILKLVTGSNNVQFYADGTVSSIQRIKFDNGLVLTGARPDGIQLDAPTTTDGTKTILWAGGTREGQNKNYVSIKAWGNAFNASGDRSRETVFEVGDGQGYYFYAQRVAPATGSTIGSIQLRIGGALLTSGGITSSGSIVTESSLVANNGMSVNGQAKFGGTANALRIWNAEYGAIFRRSETALHIIPTLKDQGENGEIGNLRPLSISLHNGMVQMRHSVTLGDDGAGGNMITVDNDNKLVVVTSNSRISPNFRMQIGRSAYIDAECTDRVRPAGAGSFASQNNENVRAPFYMNIDRTDISTYVPIFKQRYVQGNSCYSLGTLINGGNFRVHYHEGGDNDSTGPLIKNFAWEFNRTGDFISPGKLGAGTVRIGTDGNITGGSGNFANLNTTINNLKTDIVSSYPIGAPIPWPTDTPPEGYAIMEGQTFDKSAYPKLAMAYPSGVIPDMRGQTIKGKPSGRAVLSTEADGVKSHSHSASASSTDLGTKNTSSFDYGTKTSSSFDYGTKTSNTTGAHTHSLSGSTNTTGAHTHSMQFVSGGTSGTPGSGSPDYSKYNANTSSAGAHSHSISGTAASAGAHAHTVGIGAHTHTVGIGAHTHTVAIGSHGHTITVNNTGNTENTVKNIAFNYIVRLA
Physico‐chemical
properties
protein length:1043 AA
molecular weight: 109967,96270 Da
isoelectric point:8,68281
aromaticity:0,08054
hydropathy:-0,36836

Domains

Domains [InterPro]
DC_0538
STR
1–1041
DC_0538
IPR048390
ATT
493–617
IPR048390 IPR051934
SSF88874
STR
804–1042
SSF88874
IPR037053
ATT
811–864
IPR037053 IPR005003 IPR005003 IPR005003 IPR005003 IPR005003
IPR011083
ATT
816–863
IPR011083
WPK35504.1
1 1043
Architecture
STR
ATT
STR
ATT
STR
STR 1-492 | ATT 493-617 | STR 618-810 | ATT 811-864 | STR 865-1042 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK35504.1
1 1043
Domain Start End Length (AA) Confidence
N-terminal 1 407 407 0,0876
Central domain 408 607 201 0,3818
C-terminal 608 1043 435 0,8013
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-407
Central
408-607
C-terminal
608-1043

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV116
[NCBI] 		3077261 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK35504.1 [NCBI]
Genbank nucleotide accession
OR352946.1 [NCBI]
CDS location
range 59884 -> 63015
strand +
CDS
ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGCAAAACCGCAGGTGCACGTCCTGCTGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGATAGAACACTTTTTACTAAAGATGATTCAGGAAATATCATTGATTTAAGCATTTCTGCTGGTGGTAATATCAGTGGAAACGTGACTATTGATGGAACTTTACGCGTCAATGGACCAATAAACAATTTTGGAAATTTTTCCACAAGTGGCCAGATTACCGCTGGTAGTAGTATTTCAGCTCAAGTTTTTAGAGCATTGCAAGGTTCGTTTTATTCAAGAGCTTCAACCGGTGAAACAGCAAATGCCCATTTATGGTTTGAAAATGCCGATGGCACTGAACGAGGCGTTATATATGCTCGTCCTCAAACTACAACTGATGGTGAAATACGTCTTAGAGTTAGACAAGGAACAGGAAGCACCGTTAATAGCGAATTCTATTTCCGTTCTATAAACGGCGGTGAATTTCAAGCCAACCGTATTTTAGCATCAGATTCGTTAGTAACTAAACGCATTGCAGCTGATACAGTTATCCACGGTGGCAAAGCCTTTGGTGTATATGATACAGATTCATTAGTTAATTATGTATATCCAGGCACCGGCGAAACGAATGGTGTAAACTATCTTCGTAAAGTGCGAGCTAAATCCGGTGGTACAATGTATCATGAAATTGTTACTGCACAAACAGACCAGGCTGATGAAGTTTCTTGGTGGACTGGTAATACACCATCATTTAAATTATATGGTATTCGTAATGACGGCCGAATGATCGTCCGCAATAGCATAGCCATCGGGACCGTGACTGCAGGATACCCGTCAAGCGACTATGGTAATGGTGCCGCTTTAGGATTCGGTGTTTATTTAGCTCTAGGCGATAACGGGACGGGGCTATCATACAAAAAAACCGGTGTTTATGATTTAGTTGGTTCAGGGAATTCTGTCGCATCTATTACTCCTGATAGTTTCCGTAGTACCCGTAAAGCGATTTTTGGTCGTTCCGAGGACCAAGGTACAACATGGATTATGCCTGGAACCAACGCCGCATTTTTATCAGTTCAAACACAGGCTGATGAAAATACTGCTGGAGACGGCCAGACGCATATTGGATATAATTCTGGCGGGAAAATGTCCCACTATTTCCGCGGTAAAGGCCAAACCAACATTAATACACAAGAAGGTATGGAAGTTAACCCTGGTATTTTGAAATTGGTAACTGGTTCTAATAACGTACAGTTTTATGCCGACGGAACAGTATCTTCAATACAAAGAATTAAATTTGATAACGGATTAGTTCTTACTGGTGCTAGACCCGACGGTATTCAACTTGACGCTCCTACAACAACAGATGGCACTAAAACTATACTGTGGGCCGGTGGTACTCGCGAAGGTCAGAATAAAAATTATGTATCTATCAAAGCATGGGGTAATGCCTTTAACGCATCTGGTGATCGTTCCCGTGAAACAGTTTTTGAGGTAGGTGATGGCCAAGGTTATTATTTTTATGCGCAGCGTGTAGCTCCTGCAACAGGTTCGACTATCGGGTCAATTCAACTCCGTATTGGAGGCGCTTTATTAACTTCTGGTGGTATTACATCGTCTGGTTCTATTGTTACAGAATCTAGCCTGGTTGCAAATAACGGAATGTCTGTAAACGGCCAGGCTAAATTTGGCGGAACAGCAAATGCATTGAGAATTTGGAACGCCGAATATGGCGCTATTTTCCGTCGTTCAGAAACAGCATTGCACATTATTCCTACTCTTAAAGACCAAGGAGAAAATGGTGAAATAGGTAATCTTCGTCCATTGAGCATCTCACTTCATAACGGTATGGTTCAAATGCGTCATTCTGTCACGTTAGGCGATGATGGTGCCGGCGGTAATATGATTACTGTAGACAACGATAACAAACTTGTTGTTGTTACTAGTAATAGTCGAATTTCTCCTAATTTCAGAATGCAGATAGGTCGGTCGGCATACATTGATGCAGAATGTACTGATAGAGTACGGCCGGCTGGAGCGGGTTCTTTTGCTTCCCAAAATAATGAAAATGTACGTGCGCCGTTCTATATGAATATTGATAGAACTGATATTAGTACATATGTTCCTATTTTTAAACAACGTTATGTTCAAGGAAATAGCTGTTATTCTTTAGGAACTCTAATTAATGGTGGTAACTTTAGAGTTCATTATCATGAAGGTGGTGATAATGATTCGACGGGCCCTTTAATTAAGAACTTCGCGTGGGAATTCAATAGAACAGGCGATTTTATTTCCCCTGGTAAATTGGGAGCTGGTACAGTTCGTATTGGTACTGATGGTAATATCACCGGTGGTTCTGGCAACTTTGCTAACTTGAATACCACAATAAATAACCTTAAGACGGATATTGTCTCAAGTTATCCTATTGGTGCTCCGATTCCTTGGCCTACTGATACACCTCCTGAAGGTTATGCCATCATGGAAGGTCAAACATTTGATAAGTCTGCATACCCAAAATTGGCTATGGCTTACCCATCCGGCGTAATTCCTGATATGCGTGGTCAAACTATCAAGGGTAAACCATCTGGGCGTGCTGTATTAAGTACAGAAGCAGATGGTGTTAAGTCACATAGCCATAGTGCAAGTGCATCAAGCACAGATTTGGGTACTAAAAACACATCAAGTTTTGATTATGGTACTAAAACCTCTTCAAGCTTTGATTATGGTACGAAGACCAGTAATACCACTGGTGCTCATACGCATAGTTTGAGCGGTTCCACAAACACCACCGGTGCGCATACCCACTCAATGCAATTTGTTTCAGGTGGAACCAGCGGTACTCCAGGAAGTGGATCACCTGACTATTCTAAATACAATGCCAACACTTCTTCTGCGGGCGCTCATTCGCACTCTATATCTGGTACTGCTGCAAGCGCAGGCGCTCACGCACATACTGTCGGTATTGGTGCCCATACACATACTGTAGGTATAGGTGCTCACACTCATACTGTAGCGATTGGTTCTCACGGACATACTATCACTGTAAATAATACAGGTAATACAGAAAACACGGTTAAAAACATTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a79df7cd7c19aa5cfcce4bd65c9063744915b6586a2304f6e5d8f72a81c56440
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5250
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank