Protein

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Genbank accession
YP_007877971.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARLVPGSGAVIEPIFDDIFGVRAVRVVNGGSGYDPADPPRLTIDGCGTPDQEAILYPIIAEGSGKIVHVRVLRRGRGYDPLRVEIVPQQETPNVVRSFDINRIWQRHPNSLTRGTFTDDRLRIESDNHPKPTWTQAEAAPGGGPLVDRSFDQTFVYRGGKDVPNFGTRLAQEDKVTGILSNGGLLHTPDWASDGGAPGTFSIDTVKYDYVKNADVYDAITESNIRYYSSSKTIDEFALENGVFQWGKLEQFTWNVKTELDNLLLFIDPASLDQTLGTIEVGRIITQIGGNARGEIAKVITDNNGLPTRIYIREVQSTFASGDKILGSNGFSFTIQSAPITFPTGIFYIDFGSEASEFGPFVPGTYYMAPKNILVKKNYLIVWNQSDSSNQNHPMRFSTTPDGPLNQSSPGTILYTSSGSSSAPAADYENEYQALFLMNEDETNRIYYHCANHNYMSGYTGDEGYMILDTSTDDDDDVNMNTYYIEDFYQPGDTSTIDRSRHVDGHSKVIGMSFDGYPIYGPWGYNSSGAVAREVSSYRLRTGNEVAGNREEIVTPSTVTYAITVANGQFLVDGSVVPFLNLKRGKTYVFNQDDSSNDANHLFISTTEDGWHVGAPPVIGDTTYLYSQPHFATYYIDGSQVTYTQYLSQFTTASQREMRFFVPVDAPNNLYAFAYSTSGLGFRLTQDGYVLGDFVEDYVYDSSVGTLDEFNGKFAVTPEYPNGTYAYFMTEDSSGNPAYPYAIGPKYYGVPLFEGDTVPQKPDIFPTRAEGEVALNPDGTIAYVNVTQQGDNYFGPTTARILGGEGSGALVNPVVQTVTGLTLLNPGQGYTVAPNLQFSGGGGQDAEGAAEVSPTGKVTSISINDPGEFYQEPPYILITGGGGSGARATAEVNQGQISAINITDQGAGYTSNPQVIFTKLVNLKRKTQARQSLNSDIRYLTGLVKNVTASDTNIYVDDTSAFPGSGSFIINKETVSYTAKTSGKFTGLTRGTNFNYDQRVIVDNSQLDDDGNSTYKFNVGDVVIRKVESASNKLARVYDWNPATRELLVTFEVDELAFIDAGIPSTEDAIVQFDGGVYSSSASSQLPHVVLTSQGNSITLLTEPITTLANSAFEDDDELDGVGDGIADLVNTGTQYEGQISLDGGIILGEPGETGRDSKFGIEETVGGQNTTLFQNGDQIKDASIPFKFSTITTAGGLSEGVEHIGLITLQLDANNANGGNFSVNEVITGQVSGVQATVVSWDPTTSKLTIKDTVPFNTGDSNKGENGFLYEFSHNSTVVDIIIQNPGTNYTLAPNVAIENIGDIEATGTAVLTGAGDQVASVTITNGGYGITQSVDSGYNLHPTITFSAAPGDTTGSGAAAYAILGGEDILGTGGSRYRIKGIDYQTIIRS
Physico‐chemical
properties
protein length:1392 AA
molecular weight: 150070,31400 Da
isoelectric point:4,43739
aromaticity:0,10201
hydropathy:-0,30999

Domains

Domains [InterPro]
DC_1338
ATT
2–845
DC_1338 DC_0155
IPR025924
STR
505–560
IPR025924 DC_0155
IPR025924
STR
688–733
IPR025924
YP_007877971.1
1 1392
Architecture
ATT
STR
STR
ATT 2-845 | STR 846-1279 | STR 1332-1392
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007877971.1
1 1392
Domain Start End Length (AA) Confidence
N-terminal 1 116 116 0,9844
Central domain 117 940 825 0,3115
C-terminal 941 1392 451 0,0371
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-116
Central
117-940
C-terminal
941-1392

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Syn30
[NCBI] 		536474 Uroviricota > Caudoviricetes > Pantevenvirales > Leucotheavirus > Leucotheavirus syn30
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007877971.1 [NCBI]
Genbank nucleotide accession
NC_021072 [NCBI]
CDS location
range 157876 -> 162054
strand -
CDS
ATGGCAAGACTAGTTCCTGGATCTGGTGCCGTAATTGAACCGATTTTTGATGATATATTTGGTGTTCGAGCGGTAAGAGTAGTAAATGGTGGTAGCGGATATGATCCTGCTGATCCACCTAGACTTACTATTGATGGATGCGGCACTCCTGATCAGGAGGCGATATTATATCCAATCATTGCAGAAGGTTCTGGTAAAATTGTTCACGTTCGTGTTCTCAGAAGAGGAAGAGGATACGATCCACTTCGTGTTGAAATTGTTCCTCAACAAGAAACTCCAAATGTTGTAAGATCTTTTGATATTAATAGGATCTGGCAACGTCACCCCAACTCATTAACTAGGGGAACTTTTACAGATGATAGACTGAGAATTGAGTCTGATAATCATCCAAAACCTACATGGACTCAAGCGGAAGCAGCACCTGGTGGTGGTCCATTAGTAGATAGATCTTTTGATCAGACCTTTGTATACAGAGGTGGTAAAGATGTACCTAATTTTGGTACGAGACTTGCACAAGAAGATAAAGTAACTGGCATTCTTTCCAATGGCGGTCTTTTACATACTCCAGACTGGGCATCTGATGGTGGAGCACCAGGTACTTTCTCTATTGATACTGTAAAGTACGATTATGTAAAAAATGCAGACGTATATGATGCTATTACCGAAAGTAATATTAGATATTATTCATCATCCAAAACAATTGATGAATTTGCCTTAGAAAATGGTGTTTTTCAATGGGGTAAATTAGAACAATTTACATGGAATGTAAAAACTGAACTTGATAATTTATTATTATTCATTGATCCCGCATCTCTTGATCAAACACTGGGAACCATTGAAGTTGGTAGAATTATTACACAAATTGGTGGAAATGCCCGAGGAGAAATTGCTAAGGTTATTACCGATAATAATGGTCTTCCTACAAGAATTTATATAAGAGAAGTTCAATCTACTTTTGCATCTGGAGATAAAATTCTTGGTTCTAATGGATTTAGTTTCACAATTCAAAGTGCTCCTATTACATTCCCCACAGGTATTTTTTACATTGACTTTGGATCAGAAGCGTCTGAGTTTGGTCCTTTTGTGCCAGGGACTTATTACATGGCACCAAAAAATATTCTGGTCAAAAAGAATTACTTAATTGTTTGGAATCAATCGGATAGTAGTAATCAAAACCATCCGATGCGTTTCAGTACAACTCCAGATGGTCCTTTAAATCAATCTTCACCTGGTACGATTTTATACACCAGTAGTGGATCGTCTTCAGCACCCGCTGCGGATTATGAAAATGAGTATCAGGCTTTATTCTTAATGAATGAAGATGAGACTAATAGGATCTATTATCATTGTGCCAATCATAATTATATGTCTGGTTATACTGGTGATGAAGGATATATGATTCTTGATACATCGACGGACGATGACGACGATGTAAATATGAACACATACTACATCGAAGATTTTTATCAACCTGGTGATACATCAACCATTGATCGCAGTAGACATGTAGATGGACACTCAAAAGTTATTGGTATGTCCTTTGATGGATATCCCATTTATGGTCCATGGGGATATAATTCTAGTGGTGCTGTAGCAAGAGAAGTTTCTTCATACAGACTAAGAACTGGTAATGAGGTTGCTGGTAATCGCGAAGAAATTGTCACCCCATCAACGGTTACTTATGCAATCACTGTTGCAAATGGTCAGTTTTTAGTAGATGGTTCTGTAGTTCCATTTTTGAATCTAAAAAGAGGTAAAACCTACGTTTTTAACCAAGATGATTCTTCAAATGATGCAAATCATTTGTTTATTTCTACAACTGAAGACGGGTGGCATGTAGGTGCTCCTCCTGTTATTGGAGATACAACTTATCTTTATTCGCAACCTCATTTTGCAACTTATTATATTGATGGATCTCAAGTAACGTATACTCAGTATCTCAGTCAATTTACTACTGCATCTCAACGGGAGATGAGATTTTTTGTACCTGTAGATGCTCCAAACAATCTATATGCATTTGCATATTCTACTTCTGGATTAGGATTCAGACTTACTCAAGATGGATATGTTCTTGGCGATTTTGTTGAGGATTATGTATATGATTCATCTGTTGGTACTTTAGATGAATTTAATGGCAAATTTGCCGTTACTCCTGAGTATCCCAACGGAACATATGCTTACTTCATGACCGAAGATAGCAGTGGTAATCCAGCATATCCTTATGCTATTGGTCCAAAATATTATGGTGTTCCTTTATTTGAAGGTGATACAGTTCCTCAAAAACCAGATATTTTCCCAACTAGAGCAGAGGGAGAGGTTGCACTAAATCCTGATGGAACCATTGCATACGTTAATGTCACTCAACAGGGTGATAATTATTTTGGTCCTACCACTGCTAGAATTTTAGGTGGTGAAGGAAGTGGAGCACTTGTTAATCCAGTTGTTCAAACAGTTACTGGTCTAACACTTTTAAATCCAGGACAAGGTTATACAGTTGCACCTAACCTACAATTCAGTGGTGGCGGTGGTCAAGATGCTGAAGGTGCTGCAGAAGTAAGTCCTACTGGTAAAGTTACTAGTATCAGTATTAACGATCCTGGTGAGTTCTACCAAGAACCTCCTTACATTTTAATTACTGGTGGCGGTGGATCTGGTGCAAGAGCAACAGCGGAAGTAAATCAAGGACAGATTTCTGCAATCAATATTACTGATCAGGGTGCTGGTTATACATCTAATCCTCAAGTTATTTTTACAAAACTTGTAAATTTAAAAAGAAAGACTCAAGCAAGACAATCTTTGAACTCGGATATTCGTTATCTGACAGGTCTTGTTAAGAACGTTACTGCTTCTGATACTAATATCTACGTTGATGACACTAGTGCTTTTCCTGGTTCTGGTTCATTTATTATCAATAAAGAGACAGTTTCTTATACCGCAAAAACATCTGGTAAATTTACTGGACTTACAAGAGGAACTAACTTTAATTATGATCAGAGAGTCATTGTTGACAATAGTCAACTTGATGATGATGGAAATTCCACTTACAAATTTAATGTAGGTGATGTTGTAATCCGAAAAGTTGAAAGTGCTTCTAATAAATTAGCACGAGTATACGACTGGAATCCTGCAACTAGAGAACTTCTTGTTACATTTGAAGTTGATGAACTTGCATTTATTGATGCAGGTATTCCCTCTACCGAGGATGCTATTGTTCAGTTTGATGGTGGTGTTTATAGTTCTAGTGCATCCTCACAACTTCCACATGTAGTGCTCACTTCTCAAGGCAATTCGATTACATTACTAACCGAACCTATTACAACTCTGGCAAATAGTGCCTTTGAAGATGATGATGAATTAGATGGTGTTGGTGATGGTATTGCTGATTTGGTTAATACTGGAACTCAATATGAGGGTCAAATTAGTTTGGATGGTGGTATTATTCTTGGTGAACCTGGCGAAACTGGTAGAGACTCTAAATTTGGTATTGAAGAAACTGTTGGTGGTCAAAACACTACATTATTCCAAAATGGAGACCAAATCAAAGATGCTTCTATTCCATTCAAATTCTCCACAATCACAACTGCTGGAGGTTTGAGTGAAGGTGTTGAGCATATTGGTTTAATAACTCTTCAGTTGGATGCTAATAATGCTAATGGTGGAAACTTTAGTGTTAATGAAGTTATTACTGGTCAAGTTTCGGGAGTACAGGCAACAGTAGTTTCTTGGGATCCAACTACATCAAAACTAACTATCAAAGATACAGTACCCTTCAACACTGGTGATTCCAACAAAGGTGAGAATGGATTCTTGTATGAATTCTCACACAATTCTACAGTTGTTGATATCATTATTCAAAATCCTGGAACAAACTACACATTGGCACCTAATGTTGCAATTGAAAACATTGGTGATATTGAGGCAACTGGAACAGCAGTTCTTACTGGCGCTGGTGACCAAGTTGCTTCAGTAACTATAACTAACGGCGGATATGGCATAACACAATCTGTTGATAGTGGATATAACTTACATCCTACAATAACATTCTCTGCAGCTCCTGGCGACACTACAGGTAGCGGTGCCGCAGCGTATGCTATTTTGGGTGGTGAGGATATTTTGGGAACGGGCGGATCTAGATATAGAATCAAAGGAATCGACTATCAAACAATCATTCGTTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3c066a915e5a30d4b5ec80b01eef40dd33fef4d1d75f00cce7991a5a548767e1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4389
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn30 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank