Protein

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Genbank accession
YP_009817558.1 [GenBank]
Protein name
head-closure protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MASSVHSSYDSLLQGISQQPVRDRQEGQAQDMLNMIPDPVNGLHDRPPTEYLNSYFDTLGREVKWHHYTRSEDKYILGIMEDEVVITDFFGTPQTVVTDARALDYFSRGSLPLKDRLHAVTLGDVTLVANREVETSILQPSSFEQWSNALVYFRTINAGRTISLTVSSPDKPSVTVTYSVPTQVSTVPTPTDDIARNTDLQNQIKASGTDAVAAQIRDALDGNATFTANYTANLQGSVLEIYSDHFQTDGTRLEVTCSVTDDMGGVSVYAINRTIPSVGQLPPYAPQGYVVRITNDGSSVRDDYYLKFNAPGGTGFTSQPGKWEEVAHPRQNFRLNSDDMPMAIIQLPDLSFKVHPLDTALPEETENIFWDDRGAGDDISNPFPDFLGYAIEDMGLFQERLYFLSAEAITFSESKNYWNFFKKSATLDVVTDPVNKPANNTEVSILKYAVQHNRDLIVFADDSQFRIQGQQAITPNNTTMVVTTGFGTDLKTTPAVAGEVIFFPFKTGANSGIREFYTNNESDSNNARPITSHVKDLIKGSVIELLANSQEDILVVRGETNPNDIYVYHYLWQGTDRVQAAWHTWQVCQNCDIEYMFFDRSVLYIIQKEKETNLAQGFTLNLEDIDVTGLTHNIYLDERISAVGVNTQVILPTGYPASDVTNLVAVQGEGCPYPGMRAVFEYDEPTRTLTFKFDLEGGAVHVGKSYERLYSPSMPTLRDDNGKAIDPYRFTMGNFTVRFDETGPFDVTVRHPQYSEFKVTNSNRIVGQAIIGQVNLASSEFSTGIRMPVKDLEVIYSTDSYLPFNLSSIEWKGQIKQRGRRI
Physico‐chemical
properties
protein length:822 AA
molecular weight: 91925,39960 Da
isoelectric point:4,76665
aromaticity:0,10219
hydropathy:-0,36058

Domains

Domains [InterPro]
IPR058003
TTP
4–822
IPR058003
YP_009817558.1
1 822
Architecture
TTP
TTP 4-822
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009817558.1
1 822
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,9934
Central domain 149 362 215 0,0425
C-terminal 363 822 459 0,2059
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-362
C-terminal
363-822

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.204.O._10N.222.46.F12
[NCBI] 		1881263 Uroviricota > Caudoviricetes > Autographivirales > Cyclitvirus cyclit >
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009817558.1 [NCBI]
Genbank nucleotide accession
NC_048123 [NCBI]
CDS location
range 13646 -> 16114
strand -
CDS
ATGGCTAGTAGCGTACATTCCTCATATGACTCCTTACTTCAAGGTATCTCACAACAGCCTGTACGCGACCGTCAAGAAGGTCAAGCTCAGGACATGCTTAACATGATACCTGACCCGGTAAATGGACTACACGACCGACCACCTACAGAATATCTGAACTCCTATTTTGATACGTTAGGAAGAGAGGTTAAGTGGCATCACTATACAAGAAGTGAAGACAAGTACATCTTAGGTATCATGGAAGACGAGGTAGTAATAACTGACTTCTTTGGCACGCCTCAAACAGTGGTTACTGATGCTCGTGCATTGGATTACTTTTCTCGTGGCTCGTTACCTTTGAAAGACCGCTTACATGCAGTTACTTTAGGCGATGTTACCTTGGTAGCTAACCGAGAAGTTGAGACATCTATCCTTCAACCTTCGTCCTTTGAACAGTGGTCTAATGCTCTTGTATACTTCCGTACAATTAATGCAGGTCGTACAATAAGCTTGACGGTGTCCTCACCAGATAAGCCCTCAGTGACTGTGACTTATAGTGTACCTACTCAGGTATCTACCGTACCAACACCTACTGATGACATTGCACGTAATACAGACTTACAGAACCAGATTAAGGCCAGTGGTACTGATGCAGTAGCTGCACAGATACGCGATGCTTTGGACGGTAATGCTACCTTTACTGCTAACTATACAGCTAATCTACAAGGTTCGGTATTAGAGATATACTCAGACCATTTCCAAACTGATGGTACTCGATTAGAGGTGACATGTAGCGTTACTGATGATATGGGCGGTGTATCCGTGTATGCAATTAATCGTACAATACCTTCTGTAGGTCAGCTTCCACCCTACGCACCGCAAGGCTACGTTGTTCGTATCACTAATGACGGTTCTAGTGTTAGAGACGACTACTACCTAAAGTTCAATGCTCCGGGTGGTACAGGCTTTACATCACAGCCGGGTAAGTGGGAAGAGGTGGCACATCCACGACAGAACTTCAGACTTAACTCGGATGATATGCCTATGGCTATTATTCAGTTACCTGACTTATCTTTCAAGGTACATCCACTGGATACCGCCTTACCTGAAGAAACGGAGAATATCTTCTGGGATGACCGTGGTGCAGGTGACGATATATCTAACCCCTTCCCTGACTTCCTTGGTTATGCGATTGAAGATATGGGCCTGTTCCAAGAACGTCTGTACTTCCTTAGTGCAGAGGCTATTACATTCAGTGAGTCCAAGAACTACTGGAACTTCTTTAAGAAGTCAGCAACCTTAGACGTAGTAACTGACCCTGTTAATAAACCTGCCAACAATACAGAAGTCTCTATCCTAAAATACGCGGTACAGCACAACCGTGACTTGATTGTGTTTGCAGACGATAGCCAGTTCCGTATACAGGGACAGCAGGCAATCACACCAAACAATACTACAATGGTGGTAACTACAGGCTTTGGTACAGACCTTAAGACTACTCCTGCTGTAGCGGGTGAAGTAATCTTCTTCCCCTTTAAGACTGGTGCCAATAGCGGTATACGTGAGTTCTATACTAATAATGAGTCTGACTCTAATAATGCCAGACCTATTACGTCGCATGTGAAGGACTTGATTAAGGGTAGTGTTATTGAACTACTTGCTAACTCTCAGGAAGATATCCTTGTAGTTCGAGGTGAGACAAACCCTAATGACATTTACGTGTATCACTACTTATGGCAAGGTACTGATAGAGTTCAGGCTGCATGGCACACTTGGCAGGTCTGTCAGAACTGTGACATTGAGTACATGTTCTTCGACCGTTCTGTTCTGTATATTATCCAGAAAGAGAAGGAGACTAACTTAGCACAGGGGTTTACTCTTAACCTAGAAGATATTGACGTTACCGGATTAACTCACAACATTTACTTAGACGAGCGTATATCTGCTGTAGGGGTTAATACTCAAGTTATCCTTCCTACGGGATATCCTGCATCAGATGTGACCAACTTAGTGGCTGTACAGGGTGAAGGTTGTCCTTATCCCGGTATGAGGGCGGTGTTCGAATATGATGAACCTACGCGTACACTTACATTCAAATTCGATTTAGAAGGCGGTGCTGTGCATGTTGGTAAATCCTATGAACGGCTATATTCACCGTCTATGCCTACACTTAGAGATGACAACGGTAAAGCTATTGACCCTTATCGATTTACTATGGGTAACTTTACTGTAAGGTTTGATGAGACAGGCCCATTTGATGTAACTGTTCGACATCCTCAGTACTCCGAGTTCAAAGTAACCAATAGTAACCGTATCGTAGGACAGGCCATTATCGGTCAAGTAAACTTAGCATCTTCTGAGTTTAGTACAGGTATCCGTATGCCAGTAAAAGACCTTGAGGTTATTTACTCAACGGATTCGTATCTACCATTTAATCTATCTTCTATTGAATGGAAAGGTCAGATTAAACAAAGAGGGAGACGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
47bb310d562b5cfcfb3f126e0e487da25148a5bf51d69a3a4c32d262d14439d6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8977
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank