Protein

View in Explore
Genbank accession
WNY35850.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSQIPESQQQYGSILTILGENAEQNGKLQNKQITFTHMAIGNANDEYVQPDRNQTALVNEIARIPVNSVDVFQPTPDSVPMLKVEAILPDDVNDLVIREFAAVAMFDGNSYFHAVGNCARIYVPKPINNGNVSTPVILEMIFVITSVEPIIEIDPNVVTASRDWVNKQIGDVKSDIDGDIKSINSSNTISPKTSESALNYFNGKKCTSVLGDSISHGAFSGNLFSNGWVRLLARSLNGEYGASSYGFTPYLSLGSGANLSKDLHSVSFNGNWQSLDSSSAENLVSGQGFRSSAVGDSITFTIPTFMRRCILHYVIKPGGGTFDVSVNGVVKKSIDTNGEANNFGSVEVAMDDNRYGSCKIKMSTTSNADVDFSGISYVSASLETTCHNYSQSGRRLRYVGEDVIKTVCENSHTVVMALGHNDHGETDPAYQSEVSSKIDLFIQYANQHKVRVVVPDFCWGADSSNWMRVLLKKLASDTGGIYVDLPSMLTKEDGSPADSNHLINTLGMWVDGSHPNIKGNKWVFETIAKSMKLSCTSKEMALALHDYAIPIQLDVSVDVENSLPTALSSVKRSSNSLIVIFYLEKSPGGEFPIGDYVIAQGWPAGTDITAIQNGTYPLVSIDGSTFIGGCSISASGQVVLKITSPTIYNDLIFQISMLRAS
Physico‐chemical
properties
protein length:661 AA
molecular weight: 71550,62330 Da
isoelectric point:5,08427
aromaticity:0,08018
hydropathy:-0,11362

Domains

Domains [InterPro]
DC_1371
STR
1–425
DC_1371
IPR022225
ATT
9–163
IPR022225 IPR036514
SSF52266
STR
364–535
SSF52266
WNY35850.1
1 661
Architecture
ATT
STR
ATT 1-163 | STR 164-535 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WNY35850.1
1 661
Domain Start End Length (AA) Confidence
N-terminal 1 189 189 0,9937
Central domain 190 388 200 0,5131
C-terminal 389 661 272 0,8065
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-189
Central
190-388
C-terminal
389-661

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vb_VaM_Valp1
[NCBI] 		3076796 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio anguillarum
[NCBI] 		55601 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WNY35850.1 [NCBI]
Genbank nucleotide accession
OR500391 [NCBI]
CDS location
range 28831 -> 30816
strand -
CDS
ATGAGTCAAATACCAGAGAGCCAGCAACAGTATGGTTCCATTCTTACAATACTCGGTGAGAACGCCGAGCAGAACGGTAAGTTGCAGAACAAACAGATAACCTTTACTCATATGGCAATTGGCAATGCCAATGATGAATACGTACAACCTGATCGAAACCAAACGGCTTTGGTAAATGAAATTGCTCGTATTCCTGTAAATTCTGTTGATGTTTTTCAACCTACGCCAGACAGTGTTCCGATGCTGAAAGTGGAAGCCATTTTACCGGATGATGTGAATGACTTGGTTATTCGTGAATTTGCTGCAGTTGCAATGTTTGATGGCAACTCCTATTTTCATGCGGTAGGTAATTGTGCTCGCATTTATGTGCCAAAACCAATTAATAATGGGAATGTAAGTACACCTGTCATTCTGGAGATGATTTTTGTTATTACATCTGTAGAACCTATTATTGAAATCGATCCCAACGTAGTAACAGCTAGTAGAGATTGGGTTAACAAACAGATCGGTGATGTAAAAAGTGACATAGATGGTGATATAAAGTCTATCAATTCATCAAACACCATATCACCTAAAACCAGTGAGTCAGCATTAAATTACTTTAACGGAAAAAAATGCACATCAGTACTTGGTGATTCTATTAGTCATGGGGCTTTTTCTGGGAACTTATTTAGTAATGGCTGGGTTCGCTTATTAGCACGATCTTTAAATGGTGAATACGGAGCAAGTAGTTATGGCTTCACACCGTACTTATCATTGGGAAGTGGAGCTAATTTAAGTAAAGATTTACATAGCGTATCTTTTAATGGCAATTGGCAGTCATTAGACTCCAGTTCTGCTGAAAATCTGGTTTCAGGTCAAGGGTTCCGTTCCTCTGCCGTAGGTGACTCGATAACATTCACTATTCCTACGTTTATGCGTCGTTGTATTTTGCATTATGTAATAAAGCCTGGCGGTGGAACCTTTGACGTCAGTGTAAATGGTGTTGTTAAAAAAAGTATCGATACGAATGGTGAGGCCAACAACTTTGGAAGTGTTGAAGTTGCAATGGATGATAATAGGTACGGATCTTGTAAGATTAAAATGTCTACAACTAGTAATGCAGATGTAGATTTTTCTGGTATCAGTTATGTCTCAGCATCTCTTGAAACTACCTGTCACAACTACAGCCAATCGGGTAGGCGACTTCGTTACGTTGGTGAAGATGTTATTAAAACGGTTTGCGAAAACTCTCATACTGTCGTTATGGCACTTGGTCATAATGACCATGGAGAAACAGACCCAGCCTATCAAAGTGAAGTTTCCAGTAAAATTGACTTATTTATTCAATACGCCAATCAACATAAGGTAAGAGTTGTCGTCCCTGACTTTTGCTGGGGAGCTGATAGCTCAAATTGGATGAGAGTCTTATTGAAGAAGCTAGCTAGTGATACTGGTGGGATATATGTAGATTTGCCATCAATGCTAACCAAAGAAGATGGCAGCCCTGCAGACAGCAATCATTTAATCAACACACTTGGTATGTGGGTAGATGGTAGTCACCCAAATATTAAAGGTAACAAGTGGGTATTTGAAACGATAGCTAAATCCATGAAGTTATCATGCACAAGTAAAGAAATGGCATTAGCTCTTCATGATTACGCAATACCAATTCAGTTAGATGTCTCTGTAGATGTGGAGAACTCTTTACCTACAGCGTTATCTTCAGTCAAACGAAGCTCTAATTCACTAATCGTAATATTCTATTTGGAAAAGTCTCCAGGTGGTGAATTTCCAATTGGAGATTATGTAATAGCTCAGGGTTGGCCTGCTGGAACTGATATTACAGCTATCCAAAATGGCACCTATCCATTAGTCTCAATTGATGGAAGTACATTTATTGGTGGGTGTAGCATATCTGCGTCCGGGCAAGTTGTTTTAAAAATAACAAGCCCAACAATTTACAACGACCTGATATTTCAAATATCAATGTTAAGAGCTAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
bcc1b352f930d5264a4a4a2a190ffc6a4885450942ac6ac8393257c0b0fb7ee7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7316
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Valp1, a Newly Identified Temperate Phage Facilitating Coexistence of Lysogenic and Non-Lysogenic Populations of Vibrio anguillarum Arce,M., Venegas,G., Paez,K., Latz,S., Navarrete,P., Caruffo,M., Feijoo,C., Garcia,K. and Bastias,R. 2024 — GenBank