Protein

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Genbank accession

YP_009841920.1 [GenBank]

Protein name

putative tail sheath protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MTTNTFSVAPSVQWTERDATLQTTPSVEVNGASVGTFQWGEVELPVLVTGGPTGLVKRFFKPSNDNYMDFLVVEDFLKYSSTAWVVRMVGPLAKNAVTKGQTAITIKNKLEFEGATPSASITWAGRYPGDLANDIAINICDAAHFEEWEYNSQFAYAPQAGEFHVVVVDKVGRITDSAGAVSQVQRFEFAGLATAAGKIVLAGVDVAYVKDDTPEIVATKAATVLGALTGNASIFENIVAKSNTLTVSFKAVGPQAESTVVTDSNGITGTVSTLTVGSSGTIISGEKYELLQLTPGAKRSDSSNAYYKDVINQTSNWVYVFADTLANGLVELEGGVNDNTITRNAGFDLLRNAEAYSAKPIFGACNTISEQQAAIDASTSRRDSVTFVSPLRDAVVNNRGRETESVIAWRQSLVRDSSYFFMDDNWAYVYDKYNGVNRWIPACGGTAGVWARNIQIAGIYKSPAFHNRGKYNNYIRMAWSADSDQRAQLYKNQVNSIVTFSTEGIVLYGDKTGLTRPSAFDRINVRGTFIMAETNIAAIAKYYLGENNDAFTRQLFTNAVTPYVRQLIGMGAVVDGKVKCDDDNNPAAVVAANQMVAGIWLKPEYSINWIYLDFAAVRPDISFEEVENGGGIVAAS

Physico‐chemical properties

protein length:	636 AA
molecular weight:	68908,36610 Da
isoelectric point:	4,99833
aromaticity:	0,10377
hydropathy:	-0,09403

Domains

Domains [InterPro]

IPR052042
Unmapped
26–597

IPR052042

G3DSA:3.40.50.11780
STR
29–144

G3DSA:3.40.50.11780 G3DSA:3.40.50.11780 IPR020287

DC_1098
STR
90–346

DC_1098 IPR020287

G3DSA:3.40.50.11780
STR
298–485

G3DSA:3.40.50.11780

YP_009841920.1

1 636

Architecture

STR

TAS

STR 29-485 | TAS 517-614 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR052042	Unmapped	-	26	597	InterPro	Tail sheath structural protein	-	-	-	-
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	29	144	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
DC_1098	STR	DC_1098	90	346	Novel HMM	DC_1098	Central	Low	Positional only	21 proteins / 21 hits
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	298	482	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	298	485	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
IPR020287	TAS	DC_0666	517	614	InterPro cluster	Tail sheath protein, C-terminal domain	C-terminal	High	Text match	43 proteins / 43 hits
IPR020287	TAS	DC_0666	517	610	InterPro cluster	Tail sheath protein, C-terminal domain	C-terminal	High	Text match	43 proteins / 43 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_009841920.1

1 636

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	209	209	0,7173
Central domain	210	408	200	0,2710
C-terminal	409	636	227	0,2303

Note: Constraints were applied during segmentation.
Fixed 21 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-209

Central
210-408

C-terminal
409-636

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Serratia phage vB_SmaA_3M [NCBI]	2419930	Uroviricota > Caudoviricetes > Pantevenvirales > Miltonvirus > Miltonvirus 3M
Host	No host information

Coding sequence (CDS)

Genbank protein accession

YP_009841920.1 [NCBI]

Genbank nucleotide accession

NC_048736 [NCBI]

CDS location

range 53419 -> 55329
strand +

CDS

ATGACTACGAATACTTTCAGTGTTGCACCATCGGTCCAGTGGACTGAACGCGATGCAACGCTTCAAACTACACCAAGTGTTGAGGTTAACGGCGCGTCCGTTGGTACTTTCCAATGGGGTGAAGTTGAATTGCCTGTGCTGGTCACTGGTGGTCCGACTGGTCTGGTGAAGCGTTTCTTCAAACCTTCTAACGACAACTACATGGACTTCCTGGTTGTTGAAGACTTCCTGAAGTACAGCTCCACTGCGTGGGTTGTGCGTATGGTTGGTCCTCTGGCCAAGAACGCCGTGACCAAAGGCCAAACCGCGATCACGATCAAGAACAAGCTGGAATTCGAAGGGGCTACCCCGTCGGCTTCCATCACTTGGGCTGGCCGTTATCCAGGCGATCTGGCGAACGATATTGCCATCAACATCTGTGACGCTGCGCACTTCGAAGAATGGGAGTACAACAGCCAATTCGCGTATGCTCCTCAGGCTGGCGAGTTCCACGTTGTTGTTGTCGACAAAGTAGGCCGCATCACCGACAGCGCCGGTGCCGTGAGCCAGGTTCAGCGCTTCGAATTTGCTGGTCTGGCAACTGCCGCCGGTAAGATTGTTCTGGCTGGTGTAGACGTCGCTTATGTCAAAGATGATACCCCTGAAATCGTAGCCACCAAGGCCGCGACTGTTCTGGGTGCTCTGACTGGTAACGCATCTATCTTCGAGAACATCGTAGCCAAGTCCAACACTCTGACCGTCAGCTTCAAGGCCGTTGGCCCACAGGCTGAGAGCACTGTAGTGACAGACAGCAACGGCATCACTGGCACTGTCTCGACCCTGACCGTTGGTTCCTCTGGTACCATCATCAGCGGTGAGAAGTATGAGCTGTTGCAGCTGACTCCAGGCGCCAAGCGTTCTGACAGTTCCAACGCCTACTACAAAGACGTGATCAACCAGACCTCCAACTGGGTGTATGTGTTCGCAGATACCCTGGCCAACGGTCTCGTGGAGCTGGAAGGCGGTGTGAACGACAACACCATCACCCGCAATGCCGGTTTTGATCTGCTGCGTAACGCTGAAGCCTATTCGGCCAAGCCTATCTTCGGGGCATGTAACACCATCTCCGAACAACAGGCTGCGATCGACGCTTCCACGTCTCGGCGTGACTCCGTCACCTTTGTCAGCCCGCTGCGTGACGCTGTTGTCAACAACCGTGGACGCGAGACTGAGTCGGTGATTGCATGGCGCCAGAGCCTGGTTCGTGATTCCAGCTATTTCTTCATGGATGACAACTGGGCGTATGTGTACGACAAATACAACGGCGTGAACCGTTGGATTCCGGCATGCGGTGGTACTGCTGGGGTGTGGGCGCGTAACATTCAGATCGCGGGTATCTACAAATCCCCGGCGTTCCACAACCGTGGCAAATACAACAACTACATCCGCATGGCGTGGTCTGCAGATTCTGACCAGCGCGCGCAGCTGTACAAGAACCAGGTCAACAGCATCGTTACCTTCAGCACTGAAGGCATCGTGTTGTATGGCGACAAAACTGGTCTGACGCGCCCAAGCGCATTTGATCGCATCAACGTGCGTGGTACGTTTATCATGGCCGAGACCAACATCGCAGCCATTGCTAAATACTACCTGGGTGAGAACAACGACGCGTTTACGCGCCAGCTGTTCACCAACGCCGTTACCCCATACGTTCGCCAGCTGATCGGCATGGGCGCTGTGGTTGATGGTAAGGTCAAGTGCGACGACGATAATAACCCTGCAGCAGTTGTCGCGGCCAACCAGATGGTTGCTGGCATCTGGCTCAAACCAGAATACAGCATCAACTGGATCTACCTCGACTTTGCTGCTGTACGCCCTGACATTTCCTTCGAGGAAGTGGAGAACGGCGGCGGTATCGTAGCTGCGTCGTAA

Genome Context

Tertiary structure

PDB ID

d49fa8569fee8591c3b65c684f8c1e1f6d924889042e1b8bacc067e2dc34eccf

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,8660

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence