Protein

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Genbank accession
YP_010303047.1 [GenBank]
Protein name
putative tail spike associated glycoside hydrolase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MIEVNSFAELRTTPPTKAGDTAYLKRYYDKDSKFRGGGWFVGFPQKNTPADDGGINAVGKDGKGNPFFWQRVVDDPAAINILHFGARLDGKTDDSDAYRRNFMWVYNMKDGSDTLGVSIPSGPILLSPMDFTDLGEIPVFAMYGDTRCEKGWRPRVRIVSDKSNKQVIKVNARRVVIHGFNWNGQCTAQVNGKKVDPETIKGAIMPEQRSNNQIFFENVCPAGQFVGIRCFRGENVGGSALKFQDTLDTSITEIYGSKIFGAMIEAKWSNTVAGGWNHSTAVRLEDGNFQFGYGPAVLDMPRMTQAIMKNIWIEHTRFPGNLNDGQWVFEANSIESSDNPLNLANTRCVVNGFYFQGQGTMSLERKASTDNWLSGYERGNIRIETYGILMTDACFRPGYYTGYKITNNTDQDKWFYIGSYSFPKVNQTWQIELLGTAPGVVPNTKLQQPTQMDGMGRRVITMTRCIKPQKKVYADMHMEGTDAIADVVYQRLWEDYGKVWVKLKANSGDTIFNITTTGPTRFEAGQCTLFSDGPCECTDPTLAEMTVSVEKNQKDYARPQQRFSLHNGLAGIGANEQGMVTMQTAEGKAPKDLSKPAGFTSININGVDRVVPYY
Physico‐chemical
properties
protein length:614 AA
molecular weight: 68510,61930 Da
isoelectric point:7,90081
aromaticity:0,10912
hydropathy:-0,46954

Domains

Domains [InterPro]
DC_0717
ATT
1–115
DC_0717
IPR012334
STR
78–432
IPR012334
DC_0716
STR
109–614
DC_0716
YP_010303047.1
1 614
Architecture
ATT
STR
ATT 1-115 | STR 116-614
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010303047.1
1 614
Domain Start End Length (AA) Confidence
N-terminal 1 94 94 0,9885
Central domain 95 404 311 0,9879
C-terminal 405 614 209 0,9289
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-94
Central
95-404
C-terminal
405-614

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage pEa_SNUABM_5
[NCBI] 		2797313 Uroviricota > Caudoviricetes > Rivsvirus >
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010303047.1 [NCBI]
Genbank nucleotide accession
NC_061450 [NCBI]
CDS location
range 206725 -> 208569
strand +
CDS
ATGATCGAAGTAAATAGCTTTGCTGAACTACGCACCACTCCGCCTACCAAAGCGGGTGACACTGCGTATCTGAAACGTTACTACGACAAGGACAGCAAGTTCCGTGGCGGTGGTTGGTTTGTTGGGTTCCCACAAAAGAACACACCAGCCGATGACGGCGGTATCAATGCTGTAGGTAAAGACGGTAAGGGCAATCCGTTCTTCTGGCAACGTGTTGTTGATGACCCTGCTGCAATCAACATCCTGCACTTCGGTGCGCGTCTGGACGGCAAGACCGATGACTCAGATGCCTATCGCCGTAACTTCATGTGGGTGTACAACATGAAAGACGGCAGCGACACTCTGGGCGTAAGCATTCCATCAGGTCCTATTCTGTTAAGCCCGATGGACTTCACCGACCTTGGTGAGATTCCGGTGTTCGCCATGTATGGTGATACGCGCTGTGAGAAAGGCTGGCGTCCACGCGTTCGCATCGTCAGTGACAAATCCAACAAGCAGGTGATCAAAGTCAATGCCCGCCGTGTTGTGATTCACGGCTTCAACTGGAACGGTCAGTGTACAGCACAGGTCAATGGCAAGAAGGTTGATCCAGAGACCATCAAAGGCGCTATCATGCCTGAGCAGCGTTCAAACAATCAGATCTTCTTTGAGAACGTCTGTCCTGCTGGTCAGTTTGTTGGCATTCGCTGCTTCCGTGGTGAGAACGTTGGTGGTTCAGCGTTGAAGTTCCAGGATACCTTGGACACCTCAATCACTGAAATCTACGGCAGCAAGATCTTTGGTGCTATGATTGAAGCCAAGTGGTCAAACACCGTTGCTGGTGGCTGGAACCATTCTACGGCTGTACGTCTCGAAGACGGTAACTTCCAGTTCGGTTACGGCCCTGCTGTGTTGGACATGCCTCGTATGACTCAGGCTATCATGAAGAACATCTGGATTGAGCACACACGCTTCCCGGGTAACCTGAATGATGGTCAGTGGGTGTTTGAAGCTAACTCAATCGAAAGCTCTGACAACCCTCTGAACCTCGCCAACACTCGCTGCGTGGTCAATGGCTTCTACTTCCAGGGCCAGGGCACCATGAGCCTTGAACGTAAAGCAAGCACGGACAACTGGCTGAGTGGCTATGAGCGCGGCAACATCCGCATCGAGACCTACGGTATCTTGATGACTGACGCCTGCTTCCGTCCTGGCTACTACACTGGTTACAAGATCACGAACAATACCGATCAGGACAAGTGGTTCTACATCGGTAGCTACTCGTTCCCTAAAGTCAACCAGACGTGGCAGATTGAACTGCTGGGCACTGCACCAGGTGTTGTTCCTAACACCAAGCTGCAACAGCCTACGCAGATGGATGGCATGGGTCGTCGTGTGATCACCATGACACGCTGCATCAAACCGCAGAAGAAAGTATATGCGGACATGCACATGGAAGGTACCGACGCCATTGCGGATGTTGTGTATCAGCGTCTGTGGGAAGACTACGGCAAAGTGTGGGTCAAGCTGAAAGCCAACAGTGGTGACACTATCTTCAACATCACCACAACTGGTCCAACTCGCTTCGAAGCAGGTCAGTGTACCCTCTTCTCTGATGGTCCGTGTGAATGTACTGATCCAACTCTGGCTGAAATGACTGTCAGCGTTGAGAAGAATCAGAAAGACTATGCCCGTCCTCAGCAACGTTTCAGCCTGCACAACGGTCTGGCTGGCATCGGTGCAAACGAGCAGGGTATGGTTACCATGCAAACGGCAGAAGGAAAGGCGCCTAAAGATCTTTCCAAACCGGCGGGCTTCACCTCGATTAATATCAACGGTGTTGACCGAGTTGTTCCCTACTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
84bd7b7b5cca787d532823cfe694c73383f8c5342e8cd611a9bb537634d2764b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6810
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage pEa_SNUABM_5 Kim,S.G., Lee,S.B., Kwon,J. and Park,S.C. 2021-01-07 — GenBank