Protein

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Genbank accession
YP_010078681.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 0,59
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MAIKLSNNAVSHLAAELAQGDTQIILTPGEGSMFPTLGAGDYFQATLAKAFGQYEIVRATARDIDTLTVLRGQENTQALHFAAGDRIELRVTAGVLNALADAVRQIRPKPGDIKMWSGAVANIAAVHGSGWQLADGTNGTIDLRDRFIVGAGASYAPGNTGGANTVAISAEQMPQHNHGVNDPGHNHGVNDPTHAHSVYDPGHSHGHNTAALAPSSTGGGAFQINGYAGGTINASATGIGIYGAATGISIQGAGTGISTQNSGSGAAHENRPPYFALAFIQYTGAGVIEI
Physico‐chemical
properties
protein length:290 AA
molecular weight: 29583,34130 Da
isoelectric point:5,95612
aromaticity:0,06207
hydropathy:-0,10690

Domains

Domains [InterPro]
DC_0891
STR
1–289
DC_0891
cd22641
STR
89–187
cd22641
SSF88874
STR
109–280
SSF88874
YP_010078681.1
1 290
Architecture
STR
STR 1-289 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010078681.1
1 290
Domain Start End Length (AA) Confidence
N-terminal 1 271 271 0,5304
Central domain 272 279 9 0,0017
C-terminal 280 290 10 0,9972
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-271
Central
272-279
C-terminal
280-290

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage Gervaise
[NCBI] 		2759728 Uroviricota > Caudoviricetes > Gervaisevirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010078681.1 [NCBI]
Genbank nucleotide accession
NC_054963.1 [NCBI]
CDS location
range 16069 -> 16941
strand +
CDS
ATGGCTATCAAGCTGTCCAACAATGCAGTGTCCCATCTTGCCGCCGAGCTGGCGCAGGGCGACACCCAAATCATCCTGACGCCGGGCGAGGGCAGCATGTTCCCGACACTCGGCGCCGGAGACTACTTCCAGGCCACGCTCGCGAAAGCATTCGGCCAATACGAGATCGTGCGCGCCACTGCGCGCGACATCGACACGCTGACCGTGCTGCGAGGGCAGGAGAACACCCAGGCGCTGCACTTCGCAGCCGGCGATCGTATCGAGCTGCGCGTCACGGCGGGGGTGTTGAATGCGCTCGCCGACGCGGTTCGCCAGATTCGTCCCAAGCCGGGAGACATCAAGATGTGGAGCGGCGCGGTCGCCAACATCGCTGCCGTGCATGGGTCTGGATGGCAGCTTGCCGATGGGACGAATGGGACCATTGACCTACGGGACCGGTTCATCGTCGGGGCGGGTGCATCCTATGCGCCTGGGAACACCGGAGGAGCCAACACCGTCGCGATTTCCGCAGAGCAGATGCCGCAGCATAATCACGGGGTCAATGACCCCGGCCACAATCACGGCGTCAACGATCCGACGCACGCGCATAGCGTCTACGACCCTGGACACTCGCACGGCCACAACACGGCGGCGCTGGCTCCATCGAGCACGGGCGGCGGCGCGTTCCAGATCAACGGCTATGCCGGCGGCACGATCAACGCTTCCGCCACGGGGATCGGCATCTACGGGGCTGCTACGGGCATCAGCATTCAGGGCGCGGGGACTGGCATCAGCACGCAAAATTCCGGCAGCGGCGCCGCACACGAGAACCGACCGCCGTATTTCGCGCTGGCGTTCATCCAGTACACTGGCGCTGGTGTGATTGAAATCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
2ec79ee51c2b8e05b1954882307c749ddfe38b21b87dd285a05c194fdc684a68
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8175
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ralstonia phages Trotereau,A., Boyer,C. and Torres-Barcelo,C. 2021-03-08 — GenBank