Protein

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Genbank accession
YP_008130223.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MASKNFTGYLRSSLGSYAGHDLWRFTHISNTGEVVAGSAEEFRVAESGLYNIDIEYGNVVIESKSSLSRRWYNHGSTVVNSETVVTTLPGLLNAMVPVSDEVLLQMQALLSDAETAKDKAEAAASEAALQVNRGAESISGGMVVNRLDDNGNWNVMVKIPAFTNKMVNDKLGTNWTPEEDLHPAFVAAGGVNKTHFEIAMYTASNDGAGNPVSAPYKAPYTYVNLDSARSKCQAMGSGWDLCGNAQWAAAAIWCLMNDYQPLGNAYYGQSHAERWQSAVRQDGGIPGDASGVASILAGSGPLSWRHDNSPLGISDLVGNVWEWQDGLKISDGQVIVALEQQAEEGVWIGQAAFLDAGNKLNSSKTASASTNNDWRTTGKDVSYIENQLLQQLLIEPTTGTDATLGLLYYNNDGDRFPLRGGSWYAGSSAGLGALSLSGARSITYGDIGFRPAFFG
Physico‐chemical
properties
protein length:455 AA
molecular weight: 48680,36010 Da
isoelectric point:4,76637
aromaticity:0,09231
hydropathy:-0,24484

Domains

Domains [InterPro]
DC_1066
STR
41–455
DC_1066
Coil
Unmapped
103–130
Coil IPR042095
IPR016187
Unmapped
184–452
IPR016187
IPR005532
RBD
212–324
IPR005532
YP_008130223.1
1 455
Architecture
STR
STR 41-455
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pYD38-B
[NCBI] 		929835 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio sp. YD38
[NCBI] 		728064 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008130223.1 [NCBI]
Genbank nucleotide accession
NC_021561 [NCBI]
CDS location
range 7046 -> 8413
strand +
CDS
ATGGCGAGTAAAAATTTCACGGGCTATCTAAGGTCTTCACTCGGTAGTTATGCGGGCCATGACTTGTGGCGATTCACTCACATTAGCAACACGGGCGAGGTTGTAGCTGGTAGCGCTGAGGAGTTTAGAGTTGCCGAAAGTGGTCTTTATAATATTGACATTGAATACGGTAACGTGGTTATTGAGTCAAAAAGCTCACTATCTCGCCGCTGGTACAATCACGGCTCAACAGTAGTTAATAGTGAAACAGTAGTCACGACACTCCCCGGGCTATTAAATGCGATGGTGCCAGTTAGTGATGAAGTATTACTTCAAATGCAAGCCTTACTTTCTGACGCTGAAACTGCGAAGGATAAGGCCGAGGCTGCTGCAAGTGAAGCCGCACTACAGGTAAACAGAGGTGCAGAGTCAATATCTGGTGGAATGGTTGTTAATCGACTTGACGATAATGGCAACTGGAATGTGATGGTTAAAATTCCTGCATTCACCAACAAGATGGTCAACGACAAGCTAGGTACTAACTGGACACCAGAAGAAGATTTGCACCCTGCTTTTGTTGCGGCGGGTGGCGTAAATAAAACTCACTTTGAGATTGCAATGTACACAGCGTCAAATGATGGCGCAGGTAATCCAGTATCAGCGCCTTACAAAGCGCCGTACACATACGTCAACCTGGATAGTGCAAGGTCAAAATGCCAGGCTATGGGGTCGGGTTGGGATTTGTGCGGGAATGCTCAATGGGCGGCAGCTGCGATATGGTGCCTAATGAACGACTATCAACCGCTGGGTAATGCATACTACGGACAATCTCACGCAGAAAGATGGCAGTCAGCAGTAAGACAAGATGGTGGTATTCCTGGTGATGCAAGCGGTGTTGCTTCAATTCTAGCGGGTAGCGGCCCGCTGTCGTGGAGACACGACAATTCACCACTTGGTATTTCTGACTTGGTTGGTAATGTTTGGGAGTGGCAGGATGGGCTTAAAATCTCAGATGGACAAGTAATCGTTGCGCTTGAGCAGCAGGCCGAAGAGGGCGTGTGGATTGGTCAGGCAGCATTTTTAGACGCTGGAAATAAGCTTAATTCATCAAAAACAGCATCAGCAAGCACTAATAATGATTGGCGAACAACTGGTAAAGATGTAAGCTATATCGAAAATCAGCTTCTGCAACAATTACTTATAGAGCCAACGACTGGAACCGATGCTACCCTTGGGCTACTTTACTACAACAACGATGGCGATCGTTTCCCGCTACGCGGCGGCAGCTGGTACGCTGGCTCGAGCGCAGGCTTGGGCGCTCTCAGCCTCAGTGGTGCTCGCTCGATTACGTACGGTGATATCGGTTTCCGTCCCGCTTTCTTTGGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
7ea13b6ebc8efe7d8b5ec12e8a94fcd25ffe1e3ed8462edaed7f32997c5099f0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8157
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage pYD38-B Henn,M.R., Wolf,A., Jost,G., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank