Protein

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Genbank accession
YP_009191462.1 [GenBank]
Protein name
head closure Hc3
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLATPKEVLNSSGYLRSFPGIAKRNDVNGVSRGVEYNTAQNAVYRVLGSKLYKGETVVGDVAGSGRVSVAHGRTSQAVGVNGQLIEYRYDGTVKTMANWPADSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFISDLEDESHPDRYSAEYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLIGATTAGAALYVAQPSLMVQKGIAGTYCKTPFANSYAFISHPATGAPSVYIIGSGQASPIATASIEKIIRSYTADELATGVMETLRFDSHELLIIHLPRHVLVYDASSSQNGPQWCVLKTGLYDDVYRAIDFMYEGNQITCGDKSEAVTGQLQFDISSQYDKQQEHMLFTPIFKADNARCFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVIWKRVGRIRRLIGFKLRVITKSPVTLSGCQIRLE
Physico‐chemical
properties
protein length:444 AA
molecular weight: 49126,71380 Da
isoelectric point:6,04599
aromaticity:0,10586
hydropathy:-0,24054

Domains

Domains [InterPro]
IPR021098
STR
1–444
IPR021098
YP_009191462.1
1 444
Architecture
STR
STR 1-444
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009191462.1
1 444
Domain Start End Length (AA) Confidence
N-terminal 1 310 310 0,8102
Central domain 311 433 124 0,1580
C-terminal 434 444 10 0,9187
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-310
Central
311-433
C-terminal
434-444

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SEN22
[NCBI] 		1647458 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. diarizonae
[NCBI] 		59204 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009191462.1 [NCBI]
Genbank nucleotide accession
NC_028696 [NCBI]
CDS location
range 7693 -> 9027
strand +
CDS
ATGTTGGCTACACCGAAAGAAGTCCTCAACTCATCGGGTTATTTACGCTCATTCCCTGGCATAGCGAAGCGCAACGATGTAAATGGTGTATCGCGTGGTGTTGAATACAATACCGCTCAGAACGCTGTATATCGCGTTTTAGGCAGCAAGCTCTACAAAGGGGAAACCGTAGTCGGTGATGTAGCCGGAAGCGGTCGCGTATCAGTGGCACATGGTCGCACTTCTCAGGCGGTAGGTGTGAACGGTCAGCTCATCGAGTACCGATACGATGGCACCGTTAAGACGATGGCAAACTGGCCTGCAGACAGCGGATTCACGCAATATGAGTTAGGTTCAGTCCGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCAAAAGACGGTACTGATTCATGGTTTATCTCTGACCTCGAAGATGAATCCCACCCAGACCGTTACAGCGCCGAATATCGCGCAGAATCACAGCCGGACGGGATTATCGGCATCGGAACGTGGCGAGATTTCATCGTCTGCTTTGGTTCGTCAACGATAGAGTATTTCTCCCTGATAGGCGCAACCACCGCTGGCGCTGCGTTGTATGTCGCACAGCCATCGTTGATGGTACAGAAGGGTATTGCCGGAACATACTGTAAAACGCCATTCGCTAACTCATACGCATTCATCAGTCACCCGGCTACTGGCGCACCTTCCGTCTACATCATCGGGTCAGGGCAGGCTTCACCAATTGCGACGGCCAGTATTGAGAAAATTATCCGCTCATACACGGCTGATGAACTGGCAACCGGGGTGATGGAGACGTTGAGGTTCGACTCTCATGAACTGCTGATTATCCATCTCCCGCGTCATGTGCTGGTTTACGATGCCTCATCAAGCCAGAACGGGCCGCAATGGTGCGTACTGAAAACAGGTTTATACGACGATGTTTATCGCGCCATCGACTTCATGTACGAAGGCAACCAGATAACGTGCGGCGATAAATCAGAAGCAGTGACAGGGCAGTTGCAATTCGACATTAGTAGTCAGTACGACAAGCAGCAAGAACATATGCTGTTTACTCCCATCTTCAAGGCTGATAACGCCAGATGCTTCGATCTGGAAGTTGAATCCTCGACAGGCGTTGCGCAGTACGCTGACCGCCTGTTCCTGTCTGCAACCACAGACGGAATCAACTATGGTCGAGAGCAGATGATTGAACAAAATGAGCCGTTTGTGTACGACAAGCGTGTTATCTGGAAACGTGTTGGGCGCATTCGTCGATTAATCGGATTCAAACTGCGTGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fd7b07b636f03c7df0544a22c6b6dd6b7ec3ede1ad14f51d9ecca5031e311726
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8578
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phages of Salmonella enterica subsp. salamae and subsp. diarizonae: novel phages with a mosaic genome structure and activity against pathogenic S. enterica subsp. enterica isolates Pastekova,L., Bosak,J., Dedicova,D., Benada,O., Smarda,J. and Smajs,D. — — GenBank