Protein

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Genbank accession
AXH71715.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,78
TF
Evidence RBPdetect2
Probability 0,58
Protein sequence
MATVNLGSIKFKWKGTYAGGTAYTVDDVVSYNGSSYICILASTGNLPTNATYFEQMSQAGTNGTDLTTTLTTQGDILYRDGSGLQRLGIGTAGQALKVNSGATGYEFGTAGGIVQVKSARQTSAESWTGDNIMIGATATITPTSASNKILVMAQGVISTSGTTATGTMGMRYATGTSVTNSGTLVGGGDAAGSRSRGIAWAGNIGAAWNGTNFGYHILHAPATTSQISYRLCHLSHDGETMYLNRTGRDTDDADHGRFDTNITLMEISSGVL
Physico‐chemical
properties
protein length:272 AA
molecular weight: 28121,81810 Da
isoelectric point:6,17615
aromaticity:0,07353
hydropathy:-0,14522

Domains

Domains [InterPro]
DC_0393
STR
1–272
DC_0393
G3DSA:2.10.10.20
ATT
16–62
G3DSA:2.10.10.20
IPR003610
CBM
17–43
IPR003610
AXH71715.1
1 272
Architecture
STR
ATT
STR
STR 1-15 | ATT 16-62 | STR 63-272
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXH71715.1
1 272
Domain Start End Length (AA) Confidence
N-terminal 1 26 26 0,3791
Central domain 27 225 200 0,0041
C-terminal 226 272 46 0,9995
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-26
Central
27-225
C-terminal
226-272

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC025P
[NCBI] 		2259657 Uroviricota > Caudoviricetes > Autographivirales > Thoosavirus > Thoosavirus HTVC025P
Host Candidatus Pelagibacter ubique HTCC1062
[NCBI] 		335992 Bacteria > Proteobacteria > Alphaproteobacteria > Pelagibacterales > Pelagibacteraceae > Candidatus Pelagibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXH71715.1 [NCBI]
Genbank nucleotide accession
MH598799.1 [NCBI]
CDS location
range 30485 -> 31303
strand +
CDS
ATGGCTACAGTAAATCTCGGCTCAATTAAGTTCAAATGGAAGGGAACTTATGCGGGTGGAACAGCTTATACAGTTGATGACGTTGTATCGTACAATGGTTCGTCATACATTTGTATATTAGCAAGTACAGGAAACCTTCCAACCAATGCTACTTACTTTGAACAAATGTCACAAGCGGGTACTAACGGTACTGACTTAACAACAACATTAACAACACAAGGCGATATTTTATATCGTGATGGCTCAGGTCTTCAAAGACTTGGAATTGGAACAGCAGGTCAAGCACTTAAAGTAAATTCTGGTGCTACTGGTTATGAATTTGGAACAGCAGGTGGAATAGTACAAGTTAAATCAGCAAGACAAACTTCTGCTGAAAGTTGGACAGGAGACAATATAATGATAGGAGCAACTGCAACTATTACACCAACAAGTGCATCAAATAAAATTTTAGTAATGGCACAAGGTGTTATTTCTACATCAGGTACAACTGCTACAGGAACAATGGGTATGAGATATGCAACTGGTACATCAGTAACAAATTCTGGCACATTAGTTGGTGGTGGAGATGCAGCTGGTTCTAGGTCAAGAGGTATTGCTTGGGCTGGAAATATCGGTGCGGCTTGGAATGGTACAAATTTTGGGTATCATATTCTTCACGCACCAGCAACAACTTCCCAAATTTCATATCGTTTATGTCATTTATCACATGATGGAGAAACTATGTATTTAAATCGTACTGGTAGAGATACTGACGATGCTGACCATGGAAGATTTGATACAAACATAACATTAATGGAAATTAGCTCAGGAGTATTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1c4db3b076aef3cc5d717be2dbd09debfca7c8c9d8ae02e715ab1942925efaea
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8363
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50