Protein

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Genbank accession
YP_009147971.1 [GenBank]
Protein name
tail fiber protein proximal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,52
TF
Evidence RBPdetect2
Probability 0,51
Protein sequence
MAELKRKFRAQEGLDAAGEKVINVAKADRTVMSDGVNVEYLIQENTLQQYDSTRGYPEHFAVIYDNRIWVSNREIAAPAGDFTELYWNSVRTDAKWKTVSSGTTNLKSGDFISADTAGRTDMKFILPSNPQDGDTIFIKDIGGQPGYASLTVDASIQSILWMGSQIRTAQMTHPYSQMVFVFSNRLWQLYISDNESRATYITPASIHEAQAGENLVRRFTSGAEVFITLPKHANNGDIISVVDLDSLNPLFHTTLKTYDQNTSIGQVGTHEMQFRTSGDGFVVFDSADNLWRVWDGDLRTRLRIVTEDTVVRPNSHIMVFGANNDEIKTVNLNLPESPAIGDTVKISLNYMRKGQTVNINATGTDTIASNIELLQFPKRSDYPPGATWVQSSTLTFNGDESYVPILDLSYIEDENSQYWVVADNTPTVERVDSTNDETRARLGVIALATQEQANKDKEDNPEKELAITPETLANRIATKIRRGIARLATQAELEVKTGGTLLDDVIVTPKVLNDRTALEDRQGLAELATQSETNDGVDDSRIVTPKKLHNRKASEILTGILALVKTGISTLAGVDRDTKGSNIYDYADNEKAVTPASLFENKATYTSQGGSYLATETEVIQGTPHDPKVPTVVTPVELHKKTATETRIGFSEIATQNEVNTGTDDFRYVTPKKLNGRNATEDLTGISRVATDAEFAAGELDNVISTPKKIKNYFSSPDRKSVVTESGLVESGNSWDHYNLDIQKASETQRGTLQLATQVLTDAGVDDTTAVTPKKLQAKKTSETSEGIIQIATQSETTSGTVGNKAVPPKHLKYAIQEQPDWEASPLRRGPVKLTEGALTFVGDKEFGSGVKFDATTGLYINDNDKLNAGNYFKSGYAISPFEMNKTLQNFLPINATAVNSHKLDNLDSTQFIRRDIDQTVEGSLTLTQQTNTSAPLVSSSTAKFVSMLVTTEATIGDATGHSVINLDAKTNKWVIDGQANSQYLDFTAGTTDVLKLKRDGDVNVAQTLSAGNRVDASKGFSVEGGIMVINPTANNIQIGSQSKATNIQTTDAGNLKVTDTSGSSVILTTKNAVTIVGNNFVNKAGDSMSGRLDISAAMSSVITEAKAIGPLTNETVGNWSAEITTEDIYKTLPGFMVPIYSDDGGGKVIIGYVDYDPADASKRGVRAPGVLSQIGTSKKEFTYQIWNPRPATAYTDAKSSLWIRTYDPVKGAFNEWGRVYTTEAPVTSAEIGAVSTAGSSFNNLTIRDWLQIGNVRITPNPDTQSVDFTWIP
Physico‐chemical
properties
protein length:1273 AA
molecular weight: 138676,73350 Da
isoelectric point:5,03158
aromaticity:0,07148
hydropathy:-0,39788

Domains

Domains [InterPro]
DC_1986
ATT
6–126
DC_1986 DC_1209
IPR048391
ATT
1113–1221
IPR048391
YP_009147971.1
1 1273
Architecture
ATT
STR
ATT
STR
ATT 6-126 | STR 342-1112 | ATT 1113-1221 | STR 1222-1258 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009147971.1
1 1273
Domain Start End Length (AA) Confidence
N-terminal 1 842 842 0,9074
Central domain 843 1041 200 0,2465
C-terminal 1042 1273 231 0,6989
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-842
Central
843-1041
C-terminal
1042-1273

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage STML-198
[NCBI] 		1204531 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gelderlandvirus
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009147971.1 [NCBI]
Genbank nucleotide accession
NC_027344 [NCBI]
CDS location
range 23904 -> 27725
strand +
CDS
ATGGCCGAATTAAAACGTAAGTTCAGAGCTCAAGAAGGTCTGGACGCTGCGGGTGAGAAAGTCATCAACGTTGCCAAGGCGGATCGCACGGTCATGTCCGATGGCGTTAACGTTGAATATCTTATCCAAGAAAACACATTACAACAATATGACAGTACTCGTGGTTATCCAGAGCATTTTGCTGTCATTTATGATAATCGTATTTGGGTGTCTAATAGAGAAATTGCTGCGCCAGCAGGCGATTTTACTGAGCTTTACTGGAATTCTGTGCGCACTGATGCAAAATGGAAAACAGTGTCATCGGGAACCACAAATTTAAAATCAGGTGATTTTATTTCAGCTGACACCGCTGGAAGAACAGATATGAAATTCATTCTTCCTAGCAATCCGCAGGATGGCGATACCATTTTTATTAAAGATATCGGTGGTCAGCCAGGATATGCTTCTCTTACTGTCGATGCATCTATTCAATCCATATTATGGATGGGTTCTCAAATAAGAACCGCTCAAATGACGCATCCATACTCACAAATGGTTTTCGTTTTCAGCAATCGTTTGTGGCAACTTTATATAAGTGACAACGAATCAAGAGCCACTTATATAACTCCAGCTAGTATTCATGAAGCGCAAGCAGGCGAAAATCTAGTTAGAAGATTTACTTCTGGCGCAGAAGTTTTTATTACTCTTCCTAAACATGCTAACAACGGTGATATAATTTCTGTAGTTGATTTAGATTCTCTTAACCCATTGTTTCATACTACATTAAAAACTTATGACCAAAATACTAGTATAGGTCAAGTTGGAACTCACGAGATGCAGTTCCGTACTTCTGGAGATGGATTTGTAGTATTTGATTCAGCCGATAATTTATGGAGAGTATGGGACGGTGATTTACGTACCCGCTTGCGTATTGTAACTGAAGATACTGTCGTTAGACCAAATTCTCATATCATGGTTTTTGGGGCTAACAATGATGAAATAAAGACAGTTAATCTAAACTTGCCCGAATCTCCAGCTATTGGAGACACAGTAAAAATTTCTCTTAATTATATGAGAAAAGGGCAAACAGTTAATATAAACGCTACTGGAACTGACACAATAGCTTCAAATATTGAACTTTTGCAATTTCCAAAACGCTCTGATTATCCGCCTGGAGCTACTTGGGTTCAAAGCAGTACTTTAACGTTCAATGGTGATGAATCTTATGTTCCAATTTTAGATTTATCTTACATAGAAGATGAAAACTCTCAATATTGGGTAGTTGCAGATAATACTCCGACCGTTGAAAGAGTCGATTCGACTAATGACGAGACCCGAGCTCGTTTAGGTGTTATTGCTTTGGCAACCCAAGAGCAAGCTAATAAAGATAAAGAAGATAATCCAGAAAAAGAATTAGCGATTACTCCAGAAACTTTGGCGAACCGTATTGCTACTAAAATCCGGCGCGGTATTGCTCGTTTAGCTACTCAAGCTGAATTAGAAGTTAAAACTGGCGGGACTTTATTAGATGATGTGATTGTTACTCCGAAAGTTCTGAATGACCGTACTGCTTTAGAAGACCGTCAAGGCCTCGCTGAATTAGCAACTCAATCAGAAACTAACGATGGTGTTGATGATTCCAGAATTGTAACTCCGAAAAAGTTGCATAACCGTAAAGCTTCAGAAATATTAACCGGTATTTTGGCGTTAGTTAAAACTGGAATTTCAACTCTTGCGGGTGTAGATAGGGATACAAAAGGCAGTAACATATATGACTATGCTGATAATGAAAAAGCTGTAACTCCGGCTTCTTTATTTGAAAACAAAGCTACATATACATCACAAGGTGGTTCATACTTAGCTACAGAAACCGAAGTTATTCAGGGTACTCCACATGACCCTAAAGTACCTACGGTAGTAACTCCGGTCGAATTGCATAAGAAAACTGCTACTGAAACACGTATTGGTTTTAGTGAAATTGCTACGCAAAACGAAGTCAATACTGGGACGGATGATTTCCGTTATGTTACTCCTAAGAAATTAAATGGCCGTAATGCTACGGAAGATTTAACTGGTATTTCGCGAGTCGCGACAGACGCTGAATTTGCTGCAGGTGAATTAGATAATGTTATTTCTACTCCTAAAAAGATTAAGAATTACTTTTCTTCTCCTGACCGTAAATCTGTTGTTACTGAATCTGGATTAGTTGAATCAGGTAACTCCTGGGACCATTATAACCTTGATATTCAAAAAGCATCTGAGACGCAACGCGGCACATTACAATTAGCCACACAAGTTCTCACTGACGCTGGGGTTGATGACACGACTGCTGTAACTCCGAAAAAGTTACAAGCTAAAAAGACATCTGAAACTTCTGAAGGCATTATTCAGATAGCGACTCAGTCAGAAACAACAAGTGGTACTGTAGGAAATAAAGCTGTTCCTCCGAAGCATCTAAAATATGCTATCCAAGAACAACCTGATTGGGAAGCTTCTCCTCTTCGTAGAGGCCCAGTTAAATTAACAGAAGGCGCTTTAACATTTGTTGGTGATAAAGAATTTGGTTCTGGTGTCAAATTCGACGCTACAACCGGTCTTTATATTAATGATAATGACAAATTAAATGCCGGAAATTATTTCAAATCTGGATATGCTATATCTCCTTTTGAAATGAACAAGACTCTTCAAAACTTTTTGCCAATAAACGCAACTGCTGTTAATTCGCATAAGTTAGATAATCTTGATTCAACTCAGTTCATCAGAAGAGATATTGACCAAACGGTTGAAGGTTCGTTAACGTTAACGCAACAAACGAACACTAGTGCTCCTCTAGTATCCTCTAGTACTGCGAAGTTTGTTAGTATGTTGGTTACCACAGAAGCTACTATCGGGGACGCTACGGGTCACTCTGTGATTAATTTGGATGCTAAAACCAATAAATGGGTTATTGATGGACAAGCTAATTCTCAGTATTTAGATTTTACTGCTGGAACTACAGATGTTCTTAAGCTCAAACGAGATGGAGACGTTAACGTAGCCCAAACATTATCGGCTGGTAATAGAGTAGATGCTTCAAAAGGCTTTAGTGTCGAAGGTGGTATAATGGTTATTAATCCTACCGCCAACAATATTCAAATTGGTTCACAATCTAAAGCTACTAATATCCAAACAACAGACGCCGGAAACTTGAAAGTTACTGATACATCAGGCTCTTCGGTGATATTGACCACTAAAAACGCTGTTACTATCGTAGGTAATAACTTCGTTAATAAAGCTGGCGATTCAATGTCTGGCCGTTTAGATATTTCTGCTGCAATGAGTTCAGTAATTACTGAAGCTAAAGCGATAGGTCCTCTTACTAACGAAACTGTGGGTAATTGGTCAGCAGAAATCACAACTGAAGATATCTACAAAACATTGCCTGGATTTATGGTTCCAATTTATTCTGACGATGGCGGTGGTAAAGTAATTATAGGTTATGTAGATTATGACCCGGCTGATGCATCAAAACGCGGTGTAAGAGCTCCGGGTGTATTATCTCAGATTGGAACGAGTAAAAAGGAATTCACATATCAAATATGGAACCCTCGTCCAGCTACAGCTTATACAGATGCTAAATCTTCTCTTTGGATTAGAACCTATGACCCAGTTAAAGGTGCATTCAATGAATGGGGAAGAGTTTACACTACTGAAGCACCAGTTACGTCTGCTGAAATTGGTGCCGTTTCTACAGCTGGTTCTTCATTTAATAACTTAACAATCAGAGACTGGTTACAGATTGGTAATGTTCGCATTACGCCTAATCCTGATACCCAATCTGTTGATTTTACTTGGATACCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fdd96a5ab6db7a639220f83d8051f1beb1e1f889af2ffcc40e8cfa3f39b90786
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5615
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages quickly and effectively reduce contamination of various foods with Salmonella Woolston,J., Parks,A.R., Hanna,L.F., Charbonneau,D. and Sulakvelidze,A. 2016-07-02 — GenBank