Protein

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Genbank accession
XXJ63422.1 [GenBank]
Protein name
hinge connector of long tail fiber protein distal connector
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MYERLKRDGDWLLVFRHDSTGGVYFTSNAEARSVGTDPDIEAKFSALNGLEEFRREDGKFQFKLHYPELGVTNIWKQSNNFAANSVGQFLTNGNLAGGVSVTEQTSTTGTWNIIEKSNPGSSKYTIEQPTPAINNQLRFDIPQTRLLPNRTYTLSCWVGYENESDHDTAAIFHAQWFNASGTASSLSPTPGDVFEAAGNEVTIDGIVWKRHYARITTPSSLNTSNMSWFVGYTNTSGQVPSGKRWITNFMMSDAPLIKNYTGDYDAYAGGVRGYEAISIQSTASSWGGLEFNTGPQSLADGSVDSTSWWYAIGQQEAYTGNTTPGPGQTVNITELWIYAPVGSMIGEYGLATRHLREFSNNNFRLVATGVANGSSNLASCYLNDVSVFTPEARSTSQIRIIIFNDNMTVKTNSKYLLNNSTQRSNFINALNNLTNEIFLIISNGSMYADTAVDTAINQYRPVEYRGASYFGNYPYSYAAFGRADLGIVYDRCIHLAEGDSIVDTAFEDKDGIGSAGYGNALLARDIVPVDQRQNIADFGIVEGQNLIYKVRACIDRTTAIGNGTKSCNLRFYNAINAEIGRQNAIFGSSEMFETQEYFVTVPTGAVTFGVWSDLDQEYFDYALLFKGGFSTPDGVPHMISNINGMAAQDVINSPISGNAVDDTSWLNAYNSDSNLYDGVTMPVLESDNVHWGNYVLSNGEKVFTRSTGATSWIELDEVDIDPSRPYFASMWVNSIDKDNGSLTFGCEVKTALDSTTSLVKSDGTDAVLFPTTQVVDNFPADNGKWILLQTFILPHDWTDEQHQEFEDKFENYFGVHNPEDDITLKTAKGIGYYTTATSVLRWKSEHAKFNLRFRDTASITESQTMWALPIVSEVKVACFYENTLTAIDYSMK
Physico‐chemical
properties
protein length:892 AA
molecular weight: 98708,93850 Da
isoelectric point:4,67878
aromaticity:0,11996
hydropathy:-0,33352

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXJ63422.1
1 892
Domain Start End Length (AA) Confidence
N-terminal 1 257 257 0,1905
Central domain 258 456 200 0,5917
C-terminal 457 892 435 0,5431
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-257
Central
258-456
C-terminal
457-892

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage QD01
[NCBI] 		3440539 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXJ63422.1 [NCBI]
Genbank nucleotide accession
PV785814 [NCBI]
CDS location
range 240851 -> 243529
strand -
CDS
ATGTACGAAAGACTTAAACGTGATGGCGATTGGCTTCTTGTCTTTCGCCACGACTCTACGGGAGGTGTTTATTTCACCTCCAACGCTGAGGCTAGAAGTGTCGGGACTGATCCCGACATTGAAGCTAAATTCAGTGCGTTAAATGGACTTGAGGAATTTCGCCGTGAAGACGGCAAATTCCAATTCAAGCTACACTACCCTGAACTCGGTGTAACTAACATTTGGAAGCAGAGTAACAACTTTGCAGCAAACAGCGTTGGTCAATTTCTAACAAACGGTAACTTAGCAGGTGGCGTATCTGTAACTGAGCAGACATCGACAACAGGCACGTGGAATATCATCGAGAAATCGAATCCCGGGTCGTCGAAGTATACAATAGAACAGCCAACGCCTGCAATAAACAATCAGCTAAGATTTGATATACCTCAAACACGTTTACTTCCAAACAGAACATATACACTGTCTTGTTGGGTGGGATATGAAAACGAATCAGACCATGATACCGCGGCAATTTTTCATGCGCAATGGTTCAATGCGTCAGGTACAGCGTCTTCACTAAGCCCAACTCCCGGTGATGTTTTCGAAGCAGCGGGAAATGAAGTAACAATTGACGGCATCGTGTGGAAACGACACTATGCTAGAATCACAACACCATCGTCTCTAAACACGTCAAATATGTCGTGGTTTGTCGGCTATACGAACACAAGTGGTCAAGTTCCGTCTGGAAAACGTTGGATTACCAACTTCATGATGTCAGATGCACCATTGATCAAAAACTACACGGGCGATTACGATGCGTATGCAGGTGGGGTTCGCGGATATGAAGCAATCTCGATTCAGTCTACAGCTAGTAGTTGGGGTGGCTTAGAGTTCAATACGGGACCTCAGTCACTTGCAGATGGTTCGGTTGATAGCACATCGTGGTGGTATGCAATTGGTCAACAAGAAGCATACACTGGAAATACAACGCCAGGTCCCGGTCAAACAGTAAACATTACCGAACTGTGGATTTATGCACCAGTTGGTTCGATGATAGGCGAGTATGGGCTTGCAACGCGACATCTAAGAGAGTTTTCAAACAACAATTTTAGACTAGTAGCAACAGGCGTAGCAAACGGAAGCTCAAATCTAGCATCATGTTATTTGAATGACGTTAGCGTATTCACACCAGAAGCAAGATCAACTTCACAAATCAGAATCATCATTTTCAATGATAACATGACAGTGAAGACAAACAGCAAATATCTGTTAAACAACTCGACGCAGAGAAGTAACTTTATCAATGCGCTGAATAACTTGACAAATGAGATATTCCTTATCATATCGAACGGGTCAATGTATGCAGATACTGCGGTAGATACTGCAATCAATCAATACCGACCAGTTGAGTATCGAGGTGCTTCGTATTTCGGAAATTATCCGTATAGCTACGCTGCATTTGGTCGCGCTGATCTGGGAATTGTATATGACCGTTGTATTCACCTCGCTGAGGGTGATAGCATTGTAGATACTGCATTCGAAGACAAAGATGGAATCGGTTCAGCGGGTTACGGCAACGCTTTATTAGCGCGTGATATTGTGCCAGTCGATCAACGCCAGAACATTGCTGATTTCGGAATAGTCGAGGGTCAAAATTTGATTTACAAAGTCAGAGCTTGTATTGACCGAACAACTGCAATCGGTAACGGAACTAAATCTTGCAACTTGAGATTCTACAACGCTATCAATGCTGAAATAGGTCGTCAGAATGCTATATTTGGTTCGTCTGAAATGTTCGAAACTCAAGAGTACTTTGTAACTGTACCAACAGGCGCAGTTACATTTGGTGTATGGTCTGACTTAGATCAAGAGTATTTTGACTATGCTCTATTGTTCAAAGGCGGATTTTCTACGCCAGACGGCGTGCCTCATATGATCTCGAACATCAATGGTATGGCTGCTCAAGACGTAATCAACTCGCCAATCTCAGGAAATGCAGTTGATGACACAAGTTGGCTTAATGCATACAATTCAGATTCGAATCTGTATGACGGTGTTACAATGCCTGTTCTAGAAAGTGACAACGTTCATTGGGGTAACTATGTTTTATCAAATGGCGAAAAAGTTTTCACTCGTTCAACTGGCGCAACTTCTTGGATTGAATTGGATGAAGTTGACATTGATCCGTCTAGACCATACTTTGCTTCAATGTGGGTTAACTCAATTGACAAAGATAACGGTTCACTGACATTCGGCTGTGAGGTAAAAACTGCACTTGACTCGACAACTTCTCTAGTCAAGAGTGATGGAACTGATGCTGTATTGTTTCCGACTACTCAAGTCGTAGACAACTTCCCGGCTGACAACGGAAAATGGATTCTTCTTCAGACGTTCATACTACCACATGATTGGACTGATGAACAACACCAAGAATTCGAAGATAAGTTCGAGAACTACTTCGGTGTTCACAACCCTGAAGATGATATTACGTTGAAAACAGCGAAAGGCATCGGTTATTACACTACAGCTACTAGCGTACTAAGATGGAAATCAGAACATGCTAAGTTTAATCTGAGATTCAGAGATACAGCGTCAATAACTGAAAGTCAAACAATGTGGGCATTGCCTATCGTGTCTGAAGTGAAAGTTGCTTGTTTCTATGAGAACACGCTAACAGCCATTGACTATTCAATGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
17f2c35dd3e0b28ec4e5914ab3a46266fdc5563f4820576e357ec71912e80330
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7332
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio natriegens Bacteriophage QD01 Zhu,L. and Zhu,D. 2015-12 — GenBank