Protein

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Genbank accession
AGH16029.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MVMVAPGGSKKLSVGNTSNALLGAGEVFTGAWELNDFDQVLVNLVSDQAGTLNLDFGIVYEDADGAPQVYQTFSSPTQIYADTPLFRTTVKGRHAFRVRYTNGSTPQGVFHLHCSYGDSLFPVSATDDNETLVTVTEREQDNFAAIQAADVSADQYQILIDLSDTTNFPHDRNGRVDLTNTFFAIDRDAQATGTVSMGVITRIDGTDADISFIAGVGFTKSDERTIIRDRKYSPSQLKCGVVDGALRNVISGFRASNVAAVNTGVTLASPRGASTVTPAVGDIVAQFLRTAGTYTAAVSCTYHGERDT
Physico‐chemical
properties
protein length:308 AA
molecular weight: 32919,06860 Da
isoelectric point:4,74534
aromaticity:0,08442
hydropathy:-0,12338

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH16029.1
1 308
Domain Start End Length (AA) Confidence
N-terminal 1 124 124 0,2887
Central domain 125 297 174 0,0038
C-terminal 298 308 10 0,9983
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-124
Central
125-297
C-terminal
298-308

Taxonomy

  Name Taxonomy ID Lineage
Phage Dunaliella viridis virus SI2
[NCBI] 		754069 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Dunaliella viridis
[NCBI] 		140095 Eukaryota > Viridiplantae > Chlorophyta > Chlorophyceae > Chlamydomonadales > Dunaliellaceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH16029.1 [NCBI]
Genbank nucleotide accession
HQ332136 [NCBI]
CDS location
range 31805 -> 32731
strand +
CDS
ATGGTTATGGTCGCGCCCGGAGGCTCAAAGAAACTGTCTGTCGGCAACACGTCGAATGCGCTCCTCGGCGCTGGCGAGGTTTTCACTGGCGCGTGGGAGCTGAATGATTTCGATCAGGTTCTTGTCAACCTGGTTTCTGATCAGGCCGGCACGCTCAATCTCGATTTCGGGATCGTGTACGAGGATGCGGACGGGGCTCCGCAGGTGTATCAGACCTTTTCCAGCCCCACGCAAATCTATGCCGACACGCCGCTATTCCGAACGACAGTCAAGGGGCGGCACGCGTTTCGGGTGCGATACACAAACGGCTCCACACCGCAAGGCGTGTTCCATCTCCATTGCAGCTACGGCGACAGTCTGTTTCCGGTTTCGGCCACCGATGACAATGAGACGCTGGTGACCGTCACCGAACGCGAGCAGGATAATTTTGCAGCCATACAGGCCGCGGATGTGTCTGCGGATCAGTACCAGATCCTGATCGACCTTTCGGACACGACAAACTTCCCTCATGACCGCAACGGCCGGGTTGATCTGACCAATACGTTTTTTGCCATAGATCGCGATGCACAGGCGACCGGCACCGTGAGCATGGGCGTCATCACCCGGATTGACGGCACCGACGCGGATATCTCCTTTATCGCCGGCGTTGGCTTCACCAAGTCAGACGAGCGAACCATTATTCGCGACCGGAAATACTCGCCGTCCCAGCTCAAATGTGGGGTCGTGGACGGCGCGCTCCGGAACGTCATTTCAGGGTTTCGGGCAAGCAACGTTGCGGCGGTGAACACCGGCGTGACCCTCGCGAGCCCGCGGGGAGCCTCCACCGTAACACCGGCCGTTGGCGATATCGTTGCGCAATTCCTCCGCACCGCCGGGACATATACGGCCGCAGTCTCCTGCACCTATCACGGTGAGCGGGATACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1b70404787491c34feb1d25cdb01baafed2dda3f37c4c335b4452b0d7bc92511
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4764
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Dunaliella viridis virus SI2 Henn,M.R., Stepanova,O., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2012-02-15 — GenBank