Protein

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Genbank accession
YP_009785684.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSLIKLVDVSADTVSLEQGGVAQDALTYLTPEMFGAVGDGVSDDTAAVQATIDKLKTMASSTQIIGNGDYAISDSLRVHGFGSGCRMYLRSLRAASTWPSYSNWKAAKPLISIGGVGSMVGLNIECEYINGGNRADWINIVAQGCGGSHFHAERLVNVVCGVVPKDVTWPTASNKVTGGYWHDSRGTAFLLQRGTSGSSPIVEGWVFDINFIAGFDNGGIILRNGGQYANIRGQFDFNGRYLSECTVSSSVSDLTRGATITNGVDTAEVIAFYEHPLGSYKVLLAEGHDVSADGSLFSTSDTLTAEGSAWSSTIMGIQVPSVSNWYPDIIHDFTGSPFGKCIIVSPYCGGLVGGLLHSSVFLFGNSTVATTNGVNGAQWVHSGSDLSLRDVAYDNYALTFSANYMAPYRHLYMRNYRVYGSEVVVSLPRYAVTDIRTIQFSGDGTITSTEEVYRVTVSGALSGISGEALVYVNTAGIYLVNNTVTGVTLSTSGSTLQAAQGSQVSLLTMFNFQRIL
Physico‐chemical
properties
protein length:516 AA
molecular weight: 54856,81180 Da
isoelectric point:5,16743
aromaticity:0,09884
hydropathy:0,09884

Domains

Domains [InterPro]
DC_2027
STR
3–305
DC_2027
IPR012334
STR
6–356
IPR012334
IPR011050
STR
24–489
IPR011050
DC_1469
RBD
237–516
DC_1469
YP_009785684.1
1 516
Architecture
STR
RBD
STR 3-489 | RBD 490-516
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009785684.1
1 516
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,9462
Central domain 44 285 243 0,9854
C-terminal 286 516 230 0,6225
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-285
C-terminal
286-516

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PPWS1
[NCBI] 		1685500 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Kotilavirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009785684.1 [NCBI]
Genbank nucleotide accession
NC_047758.1 [NCBI]
CDS location
range 42430 -> 43980
strand +
CDS
ATGTCACTTATAAAATTAGTAGATGTTAGTGCGGACACCGTGTCTTTGGAACAGGGTGGGGTGGCTCAGGACGCCCTAACGTACCTAACGCCCGAGATGTTTGGGGCAGTTGGTGACGGTGTGTCTGATGATACTGCGGCTGTGCAGGCCACCATTGATAAACTAAAAACAATGGCGTCAAGCACCCAGATAATTGGGAATGGTGACTATGCTATTTCCGATTCACTACGAGTACATGGTTTTGGAAGTGGTTGCCGGATGTACTTGCGCAGTTTACGGGCTGCCTCTACATGGCCTTCATATAGTAACTGGAAGGCTGCCAAACCACTCATCTCTATCGGTGGGGTCGGGAGTATGGTGGGTTTAAACATAGAGTGTGAGTACATAAATGGGGGCAACAGGGCCGATTGGATAAACATAGTAGCGCAGGGTTGTGGTGGCAGCCACTTCCACGCAGAACGTTTAGTAAATGTAGTGTGTGGTGTTGTGCCCAAGGATGTAACTTGGCCCACTGCCAGTAATAAAGTCACGGGTGGTTACTGGCACGACTCCCGGGGAACAGCATTCCTACTTCAACGCGGCACCTCGGGCAGCTCCCCCATAGTAGAGGGTTGGGTATTTGACATCAACTTCATTGCTGGGTTTGATAATGGTGGTATTATCCTACGTAATGGGGGGCAGTACGCTAACATCCGTGGGCAATTTGACTTTAATGGACGTTACTTGTCCGAGTGTACTGTATCCTCCAGTGTATCCGATTTAACCCGTGGTGCTACTATAACAAATGGCGTAGATACAGCAGAGGTTATCGCATTCTATGAGCATCCTTTGGGGTCTTACAAGGTGTTGCTTGCTGAGGGTCACGATGTATCTGCTGATGGTTCTCTATTCTCTACCTCTGATACCTTAACGGCAGAAGGTAGCGCGTGGTCTTCTACCATTATGGGTATACAGGTGCCATCAGTATCAAACTGGTATCCAGATATCATCCACGACTTTACGGGAAGTCCCTTCGGTAAATGTATTATAGTCTCCCCCTACTGCGGGGGGCTTGTCGGGGGTCTGCTGCACAGTAGCGTCTTCCTATTTGGTAATAGTACGGTTGCGACAACCAATGGGGTGAACGGCGCTCAATGGGTCCACAGTGGGTCTGACCTGTCCTTGCGAGATGTTGCGTATGATAATTATGCACTGACCTTCTCCGCCAACTACATGGCACCTTACCGCCACTTGTACATGCGTAACTACCGGGTGTATGGTAGTGAGGTTGTTGTATCCTTACCCAGATATGCGGTAACGGATATCAGAACAATTCAATTCTCAGGGGACGGGACTATTACCAGCACCGAGGAAGTATACAGAGTAACAGTGTCTGGTGCCTTGTCGGGTATATCTGGTGAGGCTTTGGTGTACGTAAATACCGCCGGCATCTACCTTGTTAACAACACGGTTACTGGAGTTACGCTGAGTACCTCTGGTAGTACATTACAGGCGGCTCAGGGGTCGCAGGTGAGTTTACTCACAATGTTTAACTTTCAGAGGATTCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
213047ea921643ec692b5cd313d166f2fe57b6f5ad7f8101a9cf67cca333a15b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6742
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50