Protein

View in Explore
Genbank accession
UXR08193.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSKKLKIYNKNNELLKESPYIEGSIGEITIDNLTPDTEYKEGDFKVCWDINGKESKHVNVPGFSTLKNSNEKILIVSYNVESPTTITAQNIEGLENSIFNYFYDSLYYDVIEIVNNNTEGKINGLKGEIRDKRISPLENKIGLFIGDSITEINGRTQNNYHGFIADRTGLEVRNLGISGTGYQDRKNVAYDITEQPDFICIMLGTNDYGVVGGNNRELGNSKEHMYGTVAGSIYYTYLQLSREFPTTPIVVLTPTPRIESNPYNEKTNSKGYTLGELVQVIKDIAELFSFPVLDLYYDSNIRIWDSNVNNIFFSSGSNPPDGLHPNTTGHEWLSNLIQPFLELKAVLGSRIEKPIINHEIQDLGNGVFTKVIRPTGIFHKEDQSFIINLNKEDIDLSKNKVLKVLYNGHQINDPNGVLENSPYWYTLPNYKDGNEFNKTSIVSEFKKGLETIDIVDDGRVEYLRDYMTLYFTDISNTDIKGSDINIEDNSIPTEGTTPTPSEPSIPVITPVDNEDGTFTVTLTPIKMSWKQDQSFMVNINERQLNLTGKKIQNIEVNGTQLTKPNETASNYFYWFSVPTSEEGTEYNRTEQISNFVTELEISNTEDDGRLVYKPTPIKITYK
Physico‐chemical
properties
protein length:622 AA
molecular weight: 70479,86300 Da
isoelectric point:4,78848
aromaticity:0,09968
hydropathy:-0,53585

Domains

Domains [InterPro]
SSF52266
STR
135–341
SSF52266 DC_0605
IPR036514
STR
135–347
IPR036514
IPR036514
STR
137–347
IPR036514
cd00229
ENZ
143–340
cd00229
IPR051532
Unmapped
143–339
IPR051532
IPR013830
ENZ
144–331
IPR013830
UXR08193.1
1 622
Architecture
STR
RBD
STR 135-347 | RBD 348-622
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UXR08193.1
1 622
Domain Start End Length (AA) Confidence
N-terminal 1 362 362 0,5394
Central domain 363 611 250 0,4308
C-terminal 612 622 10 0,1255
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-362
Central
363-611
C-terminal
612-622

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_ScaM-V1SC04
[NCBI] 		2983349 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus capitis
[NCBI] 		29388 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UXR08193.1 [NCBI]
Genbank nucleotide accession
OP297178.1 [NCBI]
CDS location
range 44155 -> 46023
strand +
CDS
ATGTCAAAAAAACTTAAAATTTATAATAAAAATAATGAGCTACTAAAAGAAAGTCCATATATTGAAGGTTCTATAGGAGAGATAACTATAGACAATCTAACACCTGATACTGAATATAAAGAAGGTGATTTTAAAGTATGTTGGGATATAAACGGTAAAGAATCAAAACATGTCAATGTTCCGGGTTTTTCTACTTTAAAAAACTCTAATGAGAAAATACTTATAGTAAGCTATAATGTAGAAAGTCCGACAACAATAACTGCTCAAAATATAGAAGGGTTAGAAAATAGTATATTTAACTATTTTTATGATAGTCTTTATTATGATGTTATAGAAATTGTAAATAATAATACTGAAGGGAAAATAAATGGTCTTAAAGGTGAGATTAGAGATAAACGTATTTCTCCTTTGGAAAATAAAATAGGATTATTTATCGGTGATAGTATTACTGAAATAAATGGAAGAACCCAAAATAATTATCATGGTTTCATTGCAGATAGGACTGGTTTAGAAGTTCGTAACCTGGGTATAAGTGGTACAGGTTACCAAGATAGAAAAAATGTAGCATATGACATTACAGAACAACCTGATTTTATTTGTATAATGTTGGGTACAAATGATTATGGAGTTGTCGGAGGTAATAATAGGGAGTTAGGAAATTCTAAAGAGCATATGTATGGTACTGTAGCAGGTTCTATTTATTATACCTACTTACAGCTATCAAGAGAATTTCCTACTACACCAATAGTAGTTTTAACTCCTACACCTAGGATAGAGAGTAATCCGTACAACGAAAAGACAAACAGTAAAGGATATACATTAGGAGAACTTGTTCAAGTTATCAAGGATATAGCTGAATTATTTTCTTTCCCTGTATTAGATTTATATTACGATAGTAATATACGAATTTGGGACTCTAATGTTAATAATATCTTTTTCTCTTCCGGTAGTAACCCTCCAGACGGGTTACACCCTAATACAACAGGTCATGAGTGGCTTTCTAACCTTATACAACCTTTTTTAGAATTAAAAGCAGTATTAGGTTCTAGAATAGAAAAACCTATAATAAACCATGAAATACAAGATTTAGGTAATGGTGTATTTACAAAGGTAATAAGACCAACAGGAATATTCCATAAGGAAGACCAAAGTTTCATTATTAATCTAAATAAGGAAGATATAGACCTATCAAAAAATAAAGTATTAAAAGTATTATATAATGGTCATCAAATCAATGACCCTAATGGTGTATTAGAAAACTCCCCTTATTGGTATACATTACCTAACTATAAAGATGGAAATGAATTCAATAAAACTAGTATAGTATCAGAGTTTAAAAAAGGTTTAGAGACTATAGACATTGTTGATGATGGTAGGGTAGAGTATCTAAGAGATTATATGACTCTATATTTTACAGATATATCTAATACTGATATAAAAGGCTCAGATATAAATATAGAAGATAATTCTATACCAACAGAAGGAACAACTCCTACACCATCAGAACCAAGTATACCAGTAATTACACCTGTAGATAATGAAGATGGGACATTTACAGTTACACTAACACCTATTAAGATGTCTTGGAAACAAGACCAAAGTTTCATGGTTAATATTAACGAAAGACAATTAAACTTAACGGGTAAAAAGATACAGAATATTGAAGTTAATGGAACACAATTAACAAAACCTAATGAAACAGCAAGCAATTACTTTTACTGGTTTTCAGTACCTACGAGTGAAGAAGGAACTGAATATAATAGAACAGAGCAAATATCTAACTTTGTTACTGAATTAGAAATTAGTAATACTGAAGATGATGGTAGACTTGTATATAAACCAACCCCTATTAAAATAACATATAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
48b9d02e053a63a4a80cbe4601afc2fac72ab4aa609934ec0bc7a4e7e9f53154
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6814
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
An innovative bacteriophage-based decontamination to control environmental colonization of intensive care units with Staphylococcus capitis : an in vitro proof-of-concept Chavignon,M. and Kolenda,C. 2022-11-16 — GenBank