Protein

View in Explore
Genbank accession
YP_009196093.1 [GenBank]
Protein name
baseplate assembly protein V
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,65
Protein sequence
MRKLAKQTKEVAKGVQDSVRAAFRGVLNLVKSGSDIQQVQVSALADETIQDLELMQHFGFTSVPPAGTQAVVIPLGGKTTHGIIVATENGSFRVKNLKNGETAIYDSSGSTIILKNGRVIDIECDSFNIKCKQYSVTASGGANFNTPKLETDQQFVSQGQISGNGGMVVQGGSGASFTGSLTQQGGSISTDGDVVASGKSLVTHQHNEQGDGRPTSAPI
Physico‐chemical
properties
protein length:219 AA
molecular weight: 22825,24280 Da
isoelectric point:6,90192
aromaticity:0,04566
hydropathy:-0,25205

Domains

Domains [InterPro]
IPR014462
Unmapped
1–214
IPR014462
DC_1459
STR
3–219
DC_1459
IPR013046
Unmapped
18–217
IPR013046
IPR053861
STR
24–90
IPR053861
YP_009196093.1
1 219
Architecture
STR
STR 3-219
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009196093.1
1 219
Domain Start End Length (AA) Confidence
N-terminal 1 94 94 0,6741
Central domain 95 208 115 0,0246
C-terminal 209 219 10 0,9969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-94
Central
95-208
C-terminal
209-219

Taxonomy

  Name Taxonomy ID Lineage
Phage Mannheimia phage vB_MhM_3927AP2
[NCBI] 		1572750 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mannheimia haemolytica
[NCBI] 		75985 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pasteurellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009196093.1 [NCBI]
Genbank nucleotide accession
NC_028766 [NCBI]
CDS location
range 28316 -> 28975
strand +
CDS
ATGAGAAAATTAGCAAAACAGACTAAAGAGGTGGCAAAAGGTGTGCAAGATAGCGTGCGTGCTGCTTTTAGAGGGGTATTAAATTTAGTCAAGAGTGGCAGTGATATTCAGCAGGTACAGGTGTCCGCTTTAGCGGACGAAACTATCCAAGATTTAGAGCTAATGCAGCATTTTGGTTTCACTTCCGTGCCACCTGCCGGCACGCAAGCGGTTGTTATCCCCTTAGGTGGTAAAACCACGCACGGTATTATTGTGGCGACTGAAAACGGCTCGTTTAGGGTTAAAAATCTAAAAAATGGTGAGACGGCTATTTATGATTCAAGCGGCTCAACTATCATATTAAAAAACGGGCGAGTGATTGATATTGAGTGCGATAGCTTTAACATTAAATGCAAGCAATATTCCGTCACCGCAAGCGGTGGAGCAAATTTTAACACCCCGAAACTAGAAACCGACCAGCAGTTTGTGTCTCAAGGGCAGATCAGCGGCAACGGTGGAATGGTAGTTCAAGGCGGAAGTGGTGCAAGTTTCACTGGCTCATTAACACAACAAGGAGGCAGTATCTCAACTGATGGTGATGTGGTGGCATCGGGTAAATCACTGGTTACACATCAACACAACGAACAAGGCGATGGCAGACCTACCTCTGCTCCAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7ec97f65a866889760c2b7528effc755f1a2e55ef0d48135fcd5d026743d978e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8646
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50