Protein

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Genbank accession
QGF19663.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKISIAEPNLSNGLEQFTAKVATETRRKLQELFCDKPASFDVPKPLSKDELTCIKQAVYGRADKHMQRATGLLLPPDENLSAAELTDTARIEWMLRALASAGFAAYMDADTDDYNPVLHSHSLEYANSWLKAFLFKNNLPLPSSSDAAQTVAVGIACAPRGTCGYTDDMYVRMSRPRVEGYPLFHGLLVQAPELSMGVHRLVSTNTEDVLTLLRAEMGDSTKLDIKTRSFLRGVVYTEAEVAMFAGYVTLGDFYKLNYRRIPFARAVKEITGSDTAAQKAADVRDVTSYDIVLHPNDRPFGYEYIRMRGENNRLQSCMTHPACEYSSPYGVHPCDVYSTAHYGQGDNGLVLVEAVQADIPVGRGIMNVHSKTIVRWYGEHKAAVMLRNMYGIHIDSDAMDGVRLALIQAGDLIASPYLDGCQDVELCDGVLTVGSYGSIAMDDTSGYRELDEEDTYLCTISGDYYPESELRYQSNTETYYHPDNTDMVCAEHCPVLDEWHDGCSGHYIRVDGKSTWVHDSVGGEELADDDYTYMDDNIGYTRSPDDYVWDDVNEQYYTVSDYTYIIAEREQEESNENNQCKQYHVSCKPYSVSADLMVR
Physico‐chemical
properties
protein length:599 AA
molecular weight: 67146,23310 Da
isoelectric point:4,71772
aromaticity:0,09683
hydropathy:-0,40835

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGF19663.1
1 599
Domain Start End Length (AA) Confidence
N-terminal 1 391 391 0,0011
Central domain 392 588 198 0,6217
C-terminal 589 599 10 0,9440
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-391
Central
392-588
C-terminal
589-599

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage MA2
[NCBI] 		2608298 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGF19663.1 [NCBI]
Genbank nucleotide accession
MN271656 [NCBI]
CDS location
range 2066 -> 3865
strand +
CDS
ATGAAAATTAGTATTGCAGAACCAAACCTGAGTAACGGCCTTGAACAGTTCACAGCAAAGGTTGCTACGGAAACGCGCCGCAAATTGCAGGAATTATTCTGCGATAAACCAGCGTCATTTGATGTACCTAAACCGCTGAGTAAGGATGAGCTCACCTGTATTAAACAGGCCGTCTATGGGCGGGCCGATAAGCACATGCAGCGCGCCACAGGTTTATTGCTACCGCCTGATGAAAACCTTAGCGCCGCAGAATTAACTGATACCGCCCGTATTGAATGGATGCTCCGCGCCCTCGCCTCGGCAGGTTTCGCTGCATACATGGATGCGGATACAGATGATTATAACCCAGTACTACACTCGCACTCTTTGGAATATGCAAATAGCTGGTTGAAGGCATTCTTATTCAAGAACAACCTGCCACTTCCAAGCAGTAGTGATGCAGCGCAGACCGTGGCAGTGGGGATAGCTTGTGCGCCGCGTGGTACGTGCGGTTACACAGATGACATGTACGTGCGTATGAGTCGGCCCCGCGTTGAGGGGTACCCACTATTTCACGGACTGCTTGTACAGGCCCCTGAGCTATCGATGGGGGTACACAGGTTGGTGTCCACGAACACAGAGGACGTCCTCACGTTACTAAGGGCGGAGATGGGTGACTCCACTAAATTGGACATAAAAACGCGTAGTTTTTTACGTGGTGTTGTGTACACCGAGGCAGAAGTTGCTATGTTCGCAGGTTACGTGACGCTGGGTGATTTCTACAAACTGAACTACCGTAGAATCCCCTTCGCCCGTGCAGTCAAGGAGATTACCGGTTCAGATACAGCCGCTCAAAAAGCAGCTGACGTCCGCGATGTAACCTCGTACGATATTGTACTGCACCCCAACGACCGTCCGTTTGGGTATGAGTATATCCGTATGCGGGGAGAGAATAATAGGCTGCAATCTTGTATGACGCACCCAGCATGTGAATACAGTTCCCCTTATGGTGTACACCCTTGCGACGTGTACTCTACAGCGCACTACGGGCAGGGTGATAACGGGTTAGTTCTGGTGGAAGCAGTACAAGCGGATATTCCCGTCGGGCGTGGTATCATGAATGTACATTCCAAAACTATCGTGCGATGGTACGGGGAGCACAAGGCTGCTGTTATGTTGCGTAATATGTACGGGATACATATTGATAGCGATGCAATGGATGGCGTACGTCTCGCGCTGATTCAGGCTGGTGACCTTATCGCCTCGCCATACTTAGACGGTTGCCAAGACGTTGAGTTGTGTGATGGCGTACTGACCGTGGGTTCATACGGTAGTATTGCGATGGACGACACCAGCGGATACCGAGAGCTGGATGAAGAGGATACGTATCTCTGTACCATATCGGGCGATTACTATCCAGAGAGTGAGTTGCGGTACCAGTCAAACACGGAAACGTACTACCACCCGGATAATACAGACATGGTGTGCGCTGAACATTGCCCAGTACTGGATGAGTGGCACGACGGCTGTTCCGGTCACTACATCCGCGTAGACGGTAAATCGACATGGGTGCATGATTCTGTCGGGGGTGAAGAGTTAGCGGATGATGATTACACGTACATGGATGATAACATTGGGTACACCCGCTCACCTGATGATTATGTGTGGGATGATGTTAACGAACAGTACTACACAGTATCTGATTATACGTACATAATTGCAGAACGTGAACAGGAAGAGTCTAATGAAAACAACCAATGTAAACAGTACCACGTATCCTGCAAACCTTACTCCGTCTCCGCCGACCTCATGGTTCGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
4c81bcd098e3e96ff8b2b7d2a9bb806aa5aded130664203aa05f876ba84267bb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4018
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage-based cocktail containing Podoviridae and Myoviridae bacteriophages inhibit growth of Pectobacterium spp. under in vitro and in vivo conditions Zaczek-Moczydlowska,M., Young,G.K., Trudgett,J., Fleming,C.C., Campbell,K. and OHanlon,R. 2020-04-02 — GenBank