Protein

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Genbank accession
CBM42335.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MAQVPNVSVNFDGDGVTAIFDFDFPYQKQSEVFVSVDGVNVAYTWLVGNTHSVQVLPAPALGTRVRIYRSTLAFVPLHVFAAGVPFLPRYVDENNRQMLYVAQESVNTSTAAMDIANEVRDRIDAAEDVAAEAIATANSAAGVAGDAATVAGQAAADAADALGVANRIADTANEALETANAADAKADEALAAVSEAGVASWNGRTAIVVPESGDYNAAQITYGTGNVADSKWDSVASDNTPGATPLVSINALAATIRSITAGTGIKFTVTAGNILLESVSGDAVGTLKAWKFNRATIPGGQLANDGQIITNGRTLYPELWALIQPFCVTDAVWLAAPYTSRGMFSSGNGSTDFRMPDDNGKHPDGNTISAMVLRGDGKNSAGTPGLHQADQLQNITGTFAGTTNASRFNPTAFAGAFQGTGLATADSGNAAVTNQAGQVTFDASRIARAGSETRSANSTVIWCTVAAKVTNNVGTVDVTVLASAVATQGAALAAVQSQQVLTKFYESPPTNWTAGGQLTFTHNLGALPRLVSIEGVVTTAQGNAPLGARFEVGLFIATDYIGAQVDTKTTTAVTVRFGNSIGRLFNASSADQVLSANSQVIVRVFV
Physico‐chemical
properties
protein length:606 AA
molecular weight: 62530,73460 Da
isoelectric point:4,71539
aromaticity:0,07261
hydropathy:0,07789

Domains

Domains [InterPro]
IPR005604
ATT
1–118
IPR005604 DC_2049
DC_1263
ATT
1–295
DC_1263
Coil
Unmapped
116–136
Coil
CBM42335.1
1 606
Architecture
ATT
STR
ATT 1-295 | STR 365-604 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phi2
[NCBI] 		1450169 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CBM42335.1 [NCBI]
Genbank nucleotide accession
FN908120.1 [NCBI]
CDS location
range 1 -> 1821
strand +
CDS
ATGGCACAGGTCCCTAATGTGTCCGTGAACTTCGACGGGGATGGCGTAACAGCCATCTTCGATTTCGATTTCCCGTACCAGAAGCAATCCGAAGTCTTCGTGTCGGTTGACGGTGTAAACGTCGCCTACACTTGGCTGGTAGGCAACACCCACTCGGTGCAGGTTCTACCTGCGCCTGCCCTTGGCACCAGGGTACGTATCTACCGTTCGACCTTGGCATTCGTGCCGCTTCACGTCTTCGCCGCTGGTGTTCCGTTCCTCCCACGTTACGTGGATGAGAACAATCGCCAGATGCTGTACGTGGCCCAGGAGTCGGTCAACACCAGTACCGCCGCAATGGACATTGCGAATGAGGTGCGGGACCGAATCGACGCGGCGGAGGACGTGGCCGCAGAGGCTATCGCCACGGCGAATAGTGCCGCAGGTGTTGCGGGGGATGCTGCCACGGTGGCAGGTCAGGCCGCAGCCGATGCAGCCGATGCGCTGGGTGTCGCCAACCGTATCGCCGACACCGCTAACGAGGCCCTTGAGACAGCGAACGCCGCTGACGCCAAGGCCGACGAGGCGCTTGCGGCGGTTAGTGAGGCAGGGGTCGCCAGTTGGAATGGGCGCACGGCCATCGTCGTACCCGAGTCCGGCGACTACAACGCCGCACAGATCACTTATGGTACGGGTAATGTCGCAGACAGTAAATGGGACTCCGTTGCGTCGGATAACACCCCTGGCGCCACCCCGCTAGTCAGCATCAATGCACTGGCCGCAACTATTCGCAGTATCACTGCGGGTACTGGGATCAAGTTCACCGTGACGGCGGGCAATATCCTGCTGGAAAGCGTGTCCGGTGATGCTGTAGGTACGCTGAAGGCTTGGAAGTTCAACCGGGCCACTATCCCTGGTGGGCAGCTGGCTAACGACGGGCAGATCATCACGAATGGCCGTACACTGTACCCTGAGCTATGGGCGCTGATCCAACCCTTCTGCGTCACGGATGCGGTGTGGTTGGCTGCGCCTTATACCAGTCGGGGTATGTTCTCCAGCGGCAACGGCTCCACCGACTTCCGTATGCCAGATGACAACGGGAAACATCCCGACGGCAACACCATCTCGGCAATGGTCCTCCGGGGCGATGGTAAGAATTCAGCGGGTACGCCGGGTTTGCACCAGGCTGACCAGTTGCAAAACATTACGGGTACCTTCGCTGGGACGACCAATGCTAGTCGCTTCAACCCGACAGCCTTTGCTGGGGCATTCCAGGGTACGGGTCTTGCTACGGCGGATTCCGGTAACGCGGCAGTAACGAACCAAGCGGGACAAGTTACCTTCGATGCCTCTCGTATTGCGCGAGCAGGTTCTGAAACACGCTCGGCAAACTCCACCGTTATCTGGTGTACTGTTGCAGCCAAGGTTACAAACAACGTCGGCACCGTAGATGTCACTGTATTGGCGAGTGCAGTAGCCACCCAGGGTGCAGCACTGGCCGCAGTTCAGTCCCAGCAGGTTCTGACCAAGTTCTACGAGAGCCCGCCTACTAACTGGACAGCAGGTGGTCAACTTACCTTTACCCACAACCTGGGTGCGCTACCCCGTCTCGTGTCTATTGAGGGTGTTGTAACGACCGCGCAGGGCAACGCCCCGCTAGGGGCTCGCTTTGAGGTAGGGTTGTTCATCGCCACCGACTATATCGGCGCTCAGGTGGACACTAAGACAACAACAGCGGTAACGGTTCGGTTTGGCAACTCCATTGGGCGACTGTTCAATGCGTCCTCTGCCGATCAGGTACTGTCCGCCAACTCGCAAGTTATCGTAAGGGTGTTCGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c0adfb1774061bbad1e8c1c9aa62bda2bc29eb452c5f3fe3047e60067b7db879
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7549
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genetic basis of infectivity evolution in a bacteriophage Scanlan,P.D., Hall,A.R., Lopez-Pascua,L.D. and Buckling,A. 2011 21073584 GenBank