Protein

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Genbank accession
UWI83513.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGKVVGSYASVVRGVSEQIPSDRLPGQFSEMVNMVDDPVRGKARRHGSALVDERLLMPGTLTDTQKEYLRNYRAYDFFLGGIEYSLIFQSQPRAHGDTLPLIQCVNKATGQFLTVNLSESAAGALDPWKDGGISAVALVGRFLVLASNQLGPGYATTDKFAATQEWGVAWVRGGAYSRTYKLVIRGAPGSYPGSPVYTATYTTMASSYPSLLDTSDIAQSDPEYQKKVNDRVNAYNSAVNKWVGDALASTQPQNIAAQLAAQLTAAGYVNLAVVGGSIFMDRIADMTCDDSGDGTLFRAVFNEVDDPAKLSTVHGDQKVVRVKPRGTDEVYYMRAVKTDTAMNHFGPVQWVEGPAQVVTPGQVFALAHVTSTSITLANSPAQLAAAIGSAVPGYAPSVCGDLMDAGAVPYFFGRKVSHMTMFQDRLCIVSNGVILMSRTGDYFNWFRKSKLRVDDDDPIEAFALGSEDDIISQSSTYNKDLVFFGERGQYALPGRSAITPKTVSITQVAGERDAMLARPIPVGNLLFYGKYETKLDQTGPSKFAASLSQFQLGLFQDTPETYNASQQLDAYLRGRIIELASLPKPYTVFCRTDGLDNGLYTYRFIDQQGTQARQFDSWSRWEWDERVGTIVGLTTYKATLYVYVVRINAAGVWIGAENFIMDSSTAVSSYLDSQRSGAQYDAATSTTKFIAPDNPPDEKAQQYMGGKRPYPTAYLGGAVTNYADLRANVFGGDNTKYDVGFQFQSYTDLTPPYVRDRNDKAIVSGRLVVNRYTVSVTDTAGMDSYLTAQNQTTNVQRFSGRRVGISNNQVGIQPYSTAVVDVPAGRANTEHSMRLQSRTWLPMTISSIEWVGQLFINSRRV
Physico‐chemical
properties
protein length:861 AA
molecular weight: 94238,76040 Da
isoelectric point:6,25339
aromaticity:0,10453
hydropathy:-0,24808

Domains

Domains [InterPro]
DC_0058
STR
1–861
DC_0058
IPR058003
TTP
162–860
IPR058003
UWI83513.1
1 861
Architecture
STR
STR 1-861
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UWI83513.1
1 861
Domain Start End Length (AA) Confidence
N-terminal 1 158 158 0,9659
Central domain 159 357 200 0,3745
C-terminal 358 861 503 0,1996
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-158
Central
159-357
C-terminal
358-861

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage DLDT_So2
[NCBI] 		2972465 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UWI83513.1 [NCBI]
Genbank nucleotide accession
OP087423 [NCBI]
CDS location
range 500 -> 3085
strand -
CDS
ATGGGCAAGGTTGTAGGATCGTACGCCTCAGTCGTGCGGGGCGTCTCAGAACAGATCCCATCTGATCGTCTACCGGGCCAGTTCTCGGAGATGGTCAACATGGTTGATGACCCGGTGCGCGGGAAGGCCCGCCGCCATGGATCGGCCCTCGTTGATGAGCGCTTGCTCATGCCGGGCACGCTCACCGACACGCAGAAGGAATATCTGCGGAACTATCGAGCGTACGACTTCTTTCTCGGCGGCATAGAGTACAGCCTGATCTTCCAGTCGCAGCCCCGTGCGCATGGGGACACGCTGCCGCTGATCCAGTGCGTGAACAAGGCCACGGGCCAGTTCCTCACAGTGAACCTTAGTGAGTCCGCAGCCGGCGCGTTGGACCCGTGGAAGGATGGCGGTATCTCTGCGGTGGCCCTCGTGGGGCGATTCCTCGTGCTGGCCTCGAATCAACTCGGGCCGGGCTACGCCACCACGGACAAGTTCGCCGCGACGCAGGAGTGGGGCGTAGCATGGGTGCGCGGCGGGGCGTACAGCCGCACGTACAAGCTCGTCATTCGCGGTGCGCCTGGATCGTATCCGGGATCGCCGGTCTACACGGCCACATACACCACTATGGCCTCGTCGTACCCAAGCCTATTGGACACCTCCGATATTGCGCAGAGTGACCCAGAGTACCAGAAGAAGGTGAACGACCGCGTGAACGCGTACAACTCCGCAGTGAACAAGTGGGTGGGCGACGCGCTCGCTAGCACGCAGCCGCAGAACATCGCGGCGCAGCTTGCGGCGCAGCTTACCGCTGCGGGCTACGTCAACCTCGCAGTGGTCGGCGGTTCGATCTTCATGGACCGCATCGCGGACATGACTTGTGATGACTCTGGCGACGGCACGCTGTTCCGTGCCGTATTCAATGAGGTGGACGACCCGGCCAAGTTGAGCACCGTCCACGGCGACCAGAAGGTCGTGCGCGTCAAGCCGCGAGGCACCGACGAGGTGTACTATATGCGGGCCGTCAAGACAGACACGGCGATGAATCACTTTGGGCCGGTTCAGTGGGTCGAGGGCCCGGCACAGGTAGTGACGCCGGGTCAGGTGTTCGCGTTGGCGCACGTCACCTCGACCTCGATCACGCTCGCCAACAGCCCGGCACAGCTTGCCGCTGCCATCGGCTCGGCAGTGCCTGGGTACGCCCCGAGTGTATGCGGGGACTTGATGGACGCGGGCGCGGTGCCGTACTTCTTCGGGCGCAAGGTATCGCACATGACGATGTTCCAGGATCGCCTATGCATCGTGTCCAACGGCGTGATCCTGATGTCGCGCACAGGGGACTACTTCAACTGGTTCCGCAAGTCGAAGCTCCGCGTAGACGACGACGACCCGATCGAAGCATTCGCCCTGGGGAGCGAGGATGACATCATCTCGCAGTCGAGCACGTACAATAAAGACCTGGTCTTCTTCGGGGAACGGGGACAGTACGCGCTGCCGGGGCGATCGGCCATCACGCCCAAGACTGTCTCCATAACACAGGTAGCCGGCGAGCGGGATGCCATGCTCGCTCGGCCGATCCCCGTAGGCAACCTACTGTTCTACGGCAAGTACGAGACGAAGCTGGACCAAACCGGCCCAAGCAAGTTCGCGGCGTCGTTGAGCCAGTTCCAGCTTGGCCTGTTCCAAGACACGCCCGAGACATATAACGCATCCCAGCAGCTTGACGCATACCTACGTGGGCGCATCATCGAGCTTGCGTCGCTGCCCAAGCCCTACACGGTGTTCTGCCGCACGGATGGGCTGGACAACGGACTGTACACGTACCGCTTCATCGACCAACAGGGCACACAGGCCCGCCAGTTCGACTCGTGGTCGCGGTGGGAGTGGGATGAGCGCGTGGGTACCATCGTCGGGCTGACGACGTACAAGGCCACGCTGTATGTGTACGTCGTACGGATCAACGCCGCGGGCGTGTGGATAGGTGCTGAGAACTTCATCATGGACTCGTCCACGGCAGTATCCAGCTACCTCGATTCGCAGCGCAGCGGGGCGCAGTACGATGCGGCCACCTCGACCACGAAGTTCATCGCGCCGGATAACCCACCGGATGAGAAGGCGCAGCAGTATATGGGCGGAAAGCGCCCGTACCCGACGGCCTATCTCGGCGGCGCAGTCACGAACTACGCTGACCTGCGGGCTAATGTGTTCGGCGGGGACAACACCAAGTACGATGTTGGGTTCCAGTTCCAGTCGTACACCGACCTAACCCCGCCGTACGTGCGCGACCGCAATGACAAGGCCATCGTTAGTGGCCGGCTCGTTGTGAACCGCTACACCGTAAGCGTGACGGATACAGCCGGCATGGACTCGTACCTGACCGCGCAGAATCAGACCACGAACGTGCAGCGCTTTAGCGGCCGCCGTGTCGGCATCAGCAACAACCAAGTGGGCATCCAGCCCTACTCGACCGCAGTGGTGGATGTGCCGGCGGGGCGCGCCAACACAGAGCACAGCATGCGCTTGCAGTCGCGTACGTGGCTGCCAATGACCATCTCGTCAATCGAGTGGGTCGGGCAGCTCTTTATAAACAGCCGCCGAGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0c0a334a3b178c94645ded3318a77dce1ecc623612aa1cee94d62e04ae68319b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3118
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biological characterization and genomic analysis of novel phages DLDT_So2 and BHDT_So9 against Pseudomonas solanacearum, an infectious agent in tomato in Vietnam Pham,Q.-A.N., To,N.H., Vo,N., Tu,V.Q., Nguyen,T.M., Nguyen,H.D., Andrew,M., Le,T.-T.T., Vo,P.T., Huynh,O.N. and Hoang,H.A. — — GenBank