Protein

View in Explore
Genbank accession
YP_005087145.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTTPGASAPDGVYENGSDYGSDLTEDTAKAMVTQPFHTAYGGLPTQFKNGLGAFIQRAIDGNPENDPTIGEIADWFTGWNKVHTANAAKIVQIENRLAEGSTFMDDFGRPNNRSVLGNGWQQGGQGQGLGIIDNAARVDNTEGLIGVDSGRRWAICPVLAAENNVAVTAVVNPKGVATGTMTSLFVRANTGLTSFVYANVYGRSCYLGYGTRSGDSWTFTDWKSNTNYRLSEGASVELSAVDNVYSLTIDGAVVLQYEDTAGVIPVDATRRTVGFASETKIVNLLPSYSWGVAAFSHRPVQFVDVAANKEAIDQATEVASNAEAAAAAAMSAVVSLQNENTGASVDGVVIRDGFDVPGNNLGASWAQTGYGNFGVGSNPGRAMILAGTPPSLNTTLTYVARYITPLSTDNFNVSAVLANSGADYAEARSYVIGRCNADLSSFVYVRWSKSGGVEMGRGSAAESTVNLTKWTSDSRTVEGGAHVELRCVGNEYRVYINGSALLYYKDAANTVSVGPSNRYAGIGVTRYADYFAQWRDSAAIDSFAASDTLAKGSIQGTGWSLVRTNTNSTAVGNGAAPVPANTWDTERVRNGVTVEDLGAGIVKINREGWYAISLRLGHTQTAYQSGEYGSSRFDRQAVLYVAEPDSSSFTIARKGVMGADWDDGTDVAAMIYLKAGSRVRAGTNHNGYGPDIVGDAYNRCYFDGALTSSPQGLRGEQGEKGDKGDQGPMGEGLRFDYFVDLASQLPAAGPEGAHALVKENGRAYLFSQGAWQQGAVLIGPKGDPGVKGDPGSKGDPGSKGDPGVKGDKGDTGTAWTGTAAAYDALPTATRLAQGFVAVIV
Physico‐chemical
properties
protein length:840 AA
molecular weight: 88232,22530 Da
isoelectric point:4,95581
aromaticity:0,09167
hydropathy:-0,25571

Domains

Domains [InterPro]
DC_1994
ATT
56–295
DC_1994 DC_0667
Coil
Unmapped
319–339
Coil G3DSA:2.60.120.560 DC_1065
IPR055681
STR
327–547
IPR055681 IPR050149
YP_005087145.1
1 840
Architecture
ATT
STR
ATT 56-295 | STR 296-836 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_005087145.1
1 840
Domain Start End Length (AA) Confidence
N-terminal 1 245 245 0,4392
Central domain 246 444 200 0,5416
C-terminal 445 840 395 0,3623
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-245
Central
246-444
C-terminal
445-840

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodococcus phage RER2
[NCBI] 		1109715 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodococcus erythropolis
[NCBI] 		1833 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_005087145.1 [NCBI]
Genbank nucleotide accession
NC_016653 [NCBI]
CDS location
range 15966 -> 18488
strand +
CDS
GTGACTACCCCAGGCGCATCGGCTCCAGACGGAGTATACGAAAACGGCAGTGACTACGGTTCTGACCTTACGGAAGACACCGCTAAGGCAATGGTCACTCAGCCTTTCCACACCGCATACGGCGGTCTACCAACACAATTCAAGAACGGGCTGGGCGCGTTCATCCAACGAGCAATAGATGGTAACCCCGAGAACGATCCGACTATCGGAGAGATTGCAGACTGGTTTACCGGCTGGAACAAGGTTCACACCGCGAACGCGGCGAAGATAGTTCAGATCGAGAACCGTCTTGCCGAGGGTTCCACGTTCATGGACGACTTCGGGCGTCCGAACAACCGCAGTGTGCTTGGTAACGGCTGGCAGCAAGGCGGTCAGGGACAGGGTCTCGGCATCATCGACAACGCAGCTCGTGTGGACAACACCGAAGGTCTGATCGGTGTGGACTCTGGCCGGCGCTGGGCTATCTGCCCTGTTCTGGCAGCAGAGAACAATGTCGCTGTTACCGCTGTCGTCAACCCCAAGGGTGTGGCGACCGGCACCATGACCTCGCTGTTCGTCCGTGCCAACACCGGACTGACTTCGTTCGTCTACGCCAACGTCTACGGTCGGTCCTGTTACCTGGGATACGGCACCCGTTCGGGTGACTCCTGGACGTTCACGGACTGGAAGTCCAACACAAACTACCGACTGTCGGAGGGTGCCAGCGTCGAGCTGTCCGCAGTCGATAACGTCTACAGCTTGACAATAGACGGTGCTGTTGTCCTACAATACGAAGACACCGCTGGAGTGATCCCGGTGGACGCCACTCGGCGTACGGTCGGCTTCGCATCTGAGACGAAGATCGTTAACCTGCTCCCCTCTTACTCGTGGGGTGTAGCAGCCTTCTCCCATCGTCCCGTTCAGTTCGTGGATGTTGCGGCTAACAAGGAAGCGATTGACCAGGCTACTGAGGTAGCTAGTAACGCGGAAGCGGCTGCCGCAGCAGCAATGTCGGCTGTCGTCAGCTTGCAGAACGAGAACACCGGAGCATCGGTGGACGGTGTCGTGATCCGTGACGGATTCGACGTACCGGGCAATAACCTTGGTGCATCCTGGGCACAGACCGGTTACGGCAACTTCGGTGTCGGATCTAATCCGGGACGAGCGATGATCCTGGCGGGAACGCCTCCGTCGTTAAACACGACCCTGACCTACGTGGCTCGGTACATCACACCGCTGTCAACGGACAACTTCAACGTCTCTGCCGTCTTGGCGAACAGTGGCGCTGACTACGCAGAAGCCCGTTCGTACGTCATCGGTCGGTGCAATGCGGATCTCTCGTCGTTCGTGTACGTCCGATGGTCCAAGTCGGGTGGCGTGGAGATGGGACGCGGTTCGGCTGCCGAATCGACCGTGAACCTGACCAAGTGGACCTCTGACTCTCGCACTGTCGAGGGTGGAGCCCACGTCGAGTTGCGTTGTGTCGGTAACGAATACCGGGTCTACATCAACGGTAGTGCTCTGCTCTACTACAAGGACGCTGCCAACACTGTCTCTGTGGGACCGTCCAACCGGTACGCCGGCATCGGCGTCACCCGGTACGCGGACTACTTTGCACAGTGGCGTGACTCGGCGGCTATCGACAGTTTCGCAGCATCCGACACTCTGGCTAAGGGTTCGATCCAGGGCACAGGCTGGTCGTTGGTCCGCACGAACACAAATAGCACAGCAGTCGGTAACGGAGCTGCCCCGGTTCCAGCCAACACCTGGGATACCGAGCGGGTCCGCAACGGTGTGACGGTCGAGGATCTCGGCGCGGGCATCGTGAAGATCAACAGGGAGGGTTGGTACGCAATCTCCTTGCGCCTGGGACACACCCAGACGGCCTACCAGTCAGGTGAATACGGCTCCAGCCGATTCGATCGACAAGCGGTTCTCTACGTGGCAGAGCCCGACTCAAGTTCGTTCACTATCGCCCGTAAGGGTGTTATGGGAGCTGACTGGGACGACGGTACAGACGTAGCAGCGATGATCTACCTCAAGGCCGGATCTCGCGTCCGGGCCGGTACGAACCACAACGGCTACGGCCCCGACATTGTCGGTGACGCTTACAACCGTTGCTACTTCGACGGTGCTCTCACGTCCAGCCCACAGGGCTTGCGTGGTGAACAGGGTGAGAAGGGCGATAAGGGCGACCAGGGTCCGATGGGCGAAGGACTTCGGTTCGACTACTTCGTTGATCTGGCCTCGCAGCTCCCGGCTGCCGGCCCCGAAGGGGCTCACGCTCTGGTGAAGGAAAACGGACGGGCTTACCTGTTCAGCCAGGGTGCTTGGCAACAAGGTGCAGTGCTCATCGGCCCCAAGGGCGATCCTGGCGTCAAGGGTGACCCAGGCTCGAAGGGTGATCCCGGAAGCAAGGGTGATCCTGGTGTGAAGGGTGACAAGGGTGACACCGGTACCGCTTGGACCGGTACTGCCGCTGCCTACGATGCTCTGCCCACCGCTACGCGGTTGGCTCAGGGCTTTGTGGCGGTGATCGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
df108f5908b4140310ebfd85057d022dc3919eba6b2c5401434b705cd02c5756
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7563
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence and characterization of the Rhodococcus bacteriophages REQ1, RGL3 and RER2 Petrovski,S. 2012-11-06 — GenBank