Protein

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Genbank accession
YP_010357492.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSNIVLTIGNKTAGYPLQYGSIRVLFNYGTGNLSLDLALTTKSAGTGKFQWKGVPDDGINQSAANYAIAFNRDYKNIGGSNNLYAVASANKVTITSKSGDFVFASVDTSNLATLSYTITNTVLVPDLVLSVSSSSSVGDCSTVQRTATASGGVSPYTLKSGATTIASSWNGSSRTFDLSRGSLHSISVTDSTGKTVSTTANTPRNLKASEFETSLVLYSGYADLSVKNINPVYGTTPVTYSLDDVDYSSSTDFTGLPDGTYTLYIKDVFDCVITKTVVIVSNSIPVEEEASQYNHLFVSNLNSIAFSPKEEFSAFNKKNFDNTLSYSEYVKANNSITQQFIEGDVDSYGIGTQFQSSYPYNKVTIHNCDGSKVDIPSIMIQENIGTYEKVDCMLFPITTGIGVYFDGGNEYEPNTETVIGASDYISALPDWAVSGEVVDISGFGRKEVIGFGYSSDLDRNYFIISGSIGSITNSTAQVKYDIQEYNLFEFYLNMSLVSNKAVITIEGGFSFNEINKTWVSECIEKIEDTNEHLLIRWSSYKNVGEMVFASGIQGVMRIKGKIRAYAKGESEVSETDSGSYPLRQSATLGQRVSIPYATPKIWDKLNAVSGISIVGKLSINGIELVRNSEIEQEEKGDSNISEVTMTFDYGYNYLISRQDEIVLNVSTGVEGAGDGEYDTINVVPFDDKTRLIDSSGKFITVGGSFATLN
Physico‐chemical
properties
protein length:709 AA
molecular weight: 76864,42250 Da
isoelectric point:4,61296
aromaticity:0,10437
hydropathy:-0,16008

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010357492.1
1 709
Domain Start End Length (AA) Confidence
N-terminal 1 24 24 0,3336
Central domain 25 698 675 0,5765
C-terminal 699 709 10 0,1514
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-24
Central
25-698
C-terminal
699-709

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage Nekkels_1
[NCBI] 		2745692 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga sp. HaHa_2_1
[NCBI] 		2749994 Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010357492.1 [NCBI]
Genbank nucleotide accession
NC_062753 [NCBI]
CDS location
range 26309 -> 28438
strand +
CDS
ATGAGTAATATAGTATTAACGATAGGTAATAAAACGGCTGGTTATCCGCTACAGTACGGTTCTATTAGGGTTTTGTTTAATTACGGAACAGGTAATTTGTCTTTAGATTTAGCTTTAACAACAAAAAGCGCTGGAACTGGTAAATTTCAATGGAAAGGCGTACCCGACGATGGAATAAATCAAAGTGCCGCAAACTACGCAATAGCTTTTAATAGGGATTATAAAAATATAGGCGGTTCTAATAATTTATATGCTGTAGCTTCTGCAAATAAGGTGACAATAACTTCTAAAAGTGGTGATTTTGTTTTTGCTTCGGTAGATACCAGCAATTTAGCTACACTTAGTTATACTATAACAAATACCGTATTAGTTCCTGATTTAGTATTAAGCGTTTCGTCATCTTCATCTGTAGGCGATTGTTCAACCGTTCAAAGAACAGCAACGGCTTCTGGAGGCGTATCTCCGTACACTCTTAAATCAGGCGCAACAACAATAGCATCATCTTGGAACGGGTCATCAAGAACTTTCGATTTATCAAGAGGTTCTTTGCATAGTATCTCGGTAACTGATTCAACAGGCAAAACAGTAAGTACAACAGCAAATACACCTAGAAATTTAAAAGCCTCTGAATTTGAAACAAGCTTAGTTTTATATAGTGGATATGCTGATTTAAGCGTTAAAAATATAAACCCCGTATATGGCACAACTCCTGTAACATATTCTTTAGATGATGTTGATTACTCATCTAGCACAGATTTTACTGGATTGCCAGATGGCACATACACTCTTTACATTAAGGACGTTTTTGATTGCGTTATAACAAAAACCGTTGTTATAGTAAGCAATTCAATACCAGTAGAAGAAGAAGCTTCACAGTATAATCATTTATTTGTAAGCAATTTAAATAGTATTGCGTTTTCACCAAAAGAAGAATTTAGCGCATTCAATAAAAAGAATTTCGACAATACACTTAGCTACTCAGAATACGTAAAGGCTAACAACTCTATAACTCAACAATTCATTGAAGGAGATGTAGATAGTTATGGCATAGGAACTCAATTTCAGTCTTCATATCCTTATAACAAAGTTACTATTCATAATTGCGATGGATCAAAGGTAGACATTCCATCTATAATGATACAGGAAAATATAGGCACATACGAAAAAGTAGATTGTATGTTGTTTCCTATTACTACTGGAATAGGTGTTTATTTTGACGGTGGCAACGAATACGAGCCAAACACAGAAACAGTAATAGGAGCTAGTGACTATATTTCTGCTTTACCAGATTGGGCTGTTAGTGGTGAGGTTGTCGATATTTCTGGATTTGGAAGAAAAGAGGTAATAGGTTTTGGATACAGTAGTGACTTAGATAGAAACTACTTTATAATTAGCGGCTCTATTGGGAGTATAACAAATTCAACTGCACAAGTTAAATACGACATTCAAGAATACAACCTATTTGAATTCTATTTAAACATGTCTTTAGTTTCTAATAAGGCTGTTATAACTATAGAAGGTGGTTTTTCTTTCAATGAAATAAATAAAACATGGGTCTCAGAATGTATTGAAAAAATAGAGGATACAAACGAACATTTATTAATTAGATGGAGTTCTTACAAGAATGTAGGAGAAATGGTTTTCGCTTCTGGTATTCAGGGCGTAATGAGAATCAAAGGTAAAATTCGTGCATACGCTAAAGGAGAATCCGAAGTAAGTGAAACCGATTCAGGAAGTTATCCATTAAGACAATCAGCCACATTAGGCCAAAGAGTTTCGATACCTTATGCAACGCCTAAAATTTGGGATAAATTAAATGCAGTTAGTGGAATTTCTATTGTTGGAAAACTTTCTATTAATGGTATTGAGTTAGTTAGAAATAGCGAAATAGAGCAAGAAGAAAAAGGAGATAGTAATATTTCAGAGGTCACAATGACTTTTGATTATGGTTACAACTACCTAATAAGTAGACAAGATGAAATTGTTTTAAACGTTTCTACAGGAGTAGAAGGTGCTGGAGATGGTGAGTACGATACAATAAATGTAGTTCCTTTCGATGATAAGACTAGGTTAATTGATTCGTCAGGGAAGTTTATCACCGTTGGCGGAAGTTTCGCTACCCTCAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
99873d0cbbef907b9cc80e9245c9ae72689f28f26ce655dabed62cf27eb5829f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5837
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Highly diverse flavobacterial phages as mortality factor during North Sea spring blooms Bartlau,N., Wichels,A., Krohne,G., Adriaenssens,E.M., Heins,A., Fuchs,B.M., Amann,R. and Moraru,C. 2021 — GenBank