Protein

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Genbank accession
QIR31073.1 [GenBank]
Protein name
putative tail protein VP1
RBP type
TSP
Evidence RBPdetect
Probability 0,53
Protein sequence
MAYTSKLKEWGAVAEERSEFPDGYRYTKENPPVTHYDNFLVHNLIEDVQHLVDLTNAIDPDNDGQVADAETVQGNTPEQLGGFQYVQGTNPDVGNKGTTWLKNTSNLLFVSDGERYDIEPETGYDETHDFSGSEGFWLTHETPARTRLDAGSLKLINEQVVADFNSGISPDHGAWSWSSTSGISHDSANGRAEITSSGDATTPQLQRDVPVAQDIEFTFTVSEDTANINDESIIRLDDENGNRELEIQFNDGAGNVSLSDGTELLSSWTAGQTYVFEVDPDFGAGTVDVVIDGQTIISGRPMDATGISNIWFGSKTTDSGSVRSVFVDNVHTGAREYGEVVVSCPEPDSRIEGWDLLRFDRTMAGESVVVDVEDETGTTLVSDIQSNEDLSVAIDAATNPQIRVTFSREDTTNNPSFDYLYRRWSLRPGDNGVNIRAFGSGGEDNVHEINFTAPVTKNEDGRVTVDLDPRYVNETGDSMSGDLDVNASVQVGDDLVLDDDDGQQFIVVGKDSDTLTIAESGGSEFEQMDVNARKFTKQGHEVWHEGNRAYQVRKNNFISVKLSRR
Physico‐chemical
properties
protein length:565 AA
molecular weight: 62053,23080 Da
isoelectric point:4,23100
aromaticity:0,08142
hydropathy:-0,59664

Domains

Domains [InterPro]
DC_0289
ATT
1–190
DC_0289 IPR013320 DC_0290
QIR31073.1
1 565
Architecture
ATT
STR
RBD
ATT 1-190 | STR 201-385 | RBD 386-565
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIR31073.1
1 565
Domain Start End Length (AA) Confidence
N-terminal 1 213 213 0,7070
Central domain 214 412 200 0,0984
C-terminal 413 565 152 0,3197
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-213
Central
214-412
C-terminal
413-565

Taxonomy

  Name Taxonomy ID Lineage
Phage Halorubrum virus Hardycor2
[NCBI] 		2721756 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halorubrum coriense
[NCBI] 		64713 cellular organisms > Archaea > Methanobacteriati > Methanobacteriota > Stenosarchaea group > Halobacteria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIR31073.1 [NCBI]
Genbank nucleotide accession
MN901520 [NCBI]
CDS location
range 24950 -> 26647
strand +
CDS
ATGGCGTACACTTCTAAACTCAAGGAATGGGGAGCCGTCGCTGAGGAGCGTTCGGAGTTCCCCGATGGGTACAGGTACACGAAGGAAAACCCGCCCGTCACGCACTACGACAACTTCCTCGTACACAATCTCATCGAGGATGTTCAGCACCTCGTTGACCTCACGAACGCAATCGACCCCGATAACGACGGGCAGGTTGCTGACGCCGAGACGGTTCAGGGGAACACCCCGGAACAGCTTGGTGGCTTCCAGTACGTTCAGGGAACTAATCCCGACGTTGGAAACAAGGGGACGACGTGGCTGAAGAACACCTCGAATCTTCTGTTCGTCTCTGACGGAGAGCGGTACGATATTGAGCCTGAGACGGGCTACGACGAGACGCACGACTTCAGCGGCTCCGAAGGCTTTTGGCTGACCCACGAGACTCCGGCGAGAACCCGACTCGATGCGGGGAGTCTCAAGCTCATCAACGAGCAGGTCGTCGCTGACTTCAACTCTGGTATCTCTCCAGACCACGGAGCGTGGTCGTGGAGTAGCACTTCGGGCATTAGCCACGACTCGGCAAACGGCAGAGCCGAGATTACTTCGAGTGGAGACGCAACGACGCCTCAGCTCCAGCGGGACGTTCCGGTGGCTCAGGATATTGAGTTCACCTTCACGGTGTCGGAAGACACGGCGAACATCAACGACGAGTCTATCATCCGGCTTGACGACGAGAACGGAAATCGTGAGCTGGAGATTCAGTTTAACGATGGTGCTGGAAACGTCTCTCTGAGTGACGGCACGGAACTTCTCTCGTCGTGGACTGCCGGGCAGACCTACGTGTTCGAGGTTGACCCCGACTTCGGGGCTGGAACCGTTGATGTGGTAATCGACGGTCAGACTATTATCAGCGGTCGCCCGATGGATGCGACCGGCATCTCGAACATCTGGTTTGGCTCGAAGACCACGGATTCCGGTTCTGTCCGTAGTGTATTCGTGGATAATGTCCACACCGGAGCGAGAGAGTACGGCGAGGTCGTCGTGTCTTGCCCGGAACCGGATTCACGCATCGAGGGGTGGGACTTGCTCCGCTTCGACCGAACGATGGCCGGAGAAAGCGTCGTCGTTGACGTGGAAGACGAGACGGGTACTACGCTCGTCTCTGATATTCAGTCGAACGAAGACCTTTCGGTGGCTATTGACGCGGCGACGAACCCACAGATTCGAGTTACGTTCTCTCGGGAAGATACGACGAACAACCCATCGTTCGACTACCTCTACCGTCGCTGGAGCCTCCGGCCCGGAGACAACGGTGTGAACATCCGGGCCTTCGGCTCTGGTGGCGAGGACAACGTTCACGAAATCAACTTCACGGCCCCCGTTACGAAAAACGAAGATGGTCGTGTGACAGTTGACCTCGACCCGAGATACGTCAACGAGACGGGCGACTCGATGAGTGGCGACCTCGATGTGAACGCGAGCGTCCAAGTCGGTGACGACCTCGTTCTTGACGACGATGATGGACAGCAGTTTATCGTGGTCGGAAAGGACTCGGATACCCTCACGATTGCGGAATCTGGAGGTTCTGAGTTTGAGCAGATGGACGTGAACGCGCGGAAGTTCACGAAGCAGGGACACGAAGTTTGGCACGAAGGGAATCGGGCCTATCAGGTTCGGAAAAACAACTTCATTAGTGTAAAACTTTCACGGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5a9acd176b6099d43c221b5ed845b1c989d02407099ccaff51cb8a6bd5d2c742
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6635
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50