Protein

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Genbank accession
AFE86580.1 [GenBank]
Protein name
neck passage structure protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MSLDNFKNRTIIWDTVNKDFPQPIQIMQGDVNARTLSVKIIDNGGEIDLTGHSLKLTYQYTNSSNSGFVMIPPENLTKGEFILVIPTEMTETGVIEANLILLNEDKEQVIVSKNLTFISDNSTVSDLAQEVNNNIDDFTKLLLENMPQVMRSELNDLHIKTDSNTSNIERKANLADVTNLRNTVNSQGIEISTLENKVSALSSGVPKEVSLVSSMTDKTKSYVYTGTEPGYTPGNWYYWNGTIWAPGGTYQATAIDLDVDGIRIFTPSKTTGAINPFNGTITTTEGVVYYTVDVSNGAEKLTFYSESFGSNYGYAFYNGSGAFIPGTGQLEKFEGYQTIDVPVSATTFRVTSRLETNQNVTLFKANSSVQKNAKNINDNFVKSYGNKKLLKSKDYQHVPLLISSTTGRWVKVNNSSAVLIPISDVGKAVKIMSNALNSSSYTFLKTATGNSGDLADFATSYKGIKKLSVGEYATLQVPSDAGFLYVTNSFDDGSIHDVYPKVTPMLDTIVTVAASNSSALDKSRADYVATGANDQDVINQAITSLVYGGTIKLFDGDYNIDAFGDTKTAIYFPNNGYARTINFEGSTENKSFLSEYGVTIHVTKTAFDSLPTTGDYNVFAGDGTTLPIGVWQGFANNVNFKNFYLKLYTSQRQMVGINGQNFGSMYIEQVGVYSESYFTDRFNRYKPVTPDINSIGIISVGGANDEMARIGMDTVNVGGLGTGIIIARAEHLIVKNSTVSRSVIGYKFSGNADKPLTLINNADEGNTHLPVFKGTGLITSIDFSIERLDPGVFPNDPSGDTNPFAKELTPGGWKGTFDFNIQGSGAGINHFWQSGSGRNIKTKKISSAISGTVNPSNPEYLQEFFRTDLNKKLTFNGNSWVDSIGNIV
Physico‐chemical
properties
protein length:888 AA
molecular weight: 96778,85030 Da
isoelectric point:5,13969
aromaticity:0,10135
hydropathy:-0,26993

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
10–126
G3DSA:2.60.40.3350 DC_0775
IPR018913
ATT
10–147
IPR018913
IPR018913
ATT
25–147
IPR018913
AFE86580.1
1 888
Architecture
ATT
STR
ATT 10-147 | STR 148-888
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFE86580.1
1 888
Domain Start End Length (AA) Confidence
N-terminal 1 419 419 0,8542
Central domain 420 838 420 0,8810
C-terminal 839 888 49 0,9488
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-419
Central
420-838
C-terminal
839-888

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage ASCC465
[NCBI] 		2892350 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFE86580.1 [NCBI]
Genbank nucleotide accession
JQ740804 [NCBI]
CDS location
range 7263 -> 9929
strand +
CDS
ATGAGTTTAGATAATTTTAAAAATAGAACGATTATATGGGATACGGTCAATAAAGACTTCCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAGTTAAAATAATTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATATACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGAGTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAATACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGATAATTCGACAGTTTCTGATTTAGCTCAAGAAGTAAATAATAATATTGATGATTTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGATTTACATATTAAAACTGATTCAAATACGAGCAATATTGAGCGTAAAGCAAATTTAGCTGATGTGACTAACTTACGAAATACCGTTAACAGTCAAGGTATTGAAATTTCAACGCTTGAAAATAAAGTATCCGCTCTTTCGAGTGGCGTACCAAAGGAAGTTTCTCTAGTTTCTAGTATGACCGATAAAACCAAAAGTTATGTTTATACTGGTACTGAACCTGGATACACTCCTGGAAATTGGTACTACTGGAATGGTACAATTTGGGCACCAGGAGGTACATATCAAGCCACTGCGATTGATTTAGATGTTGATGGAATTCGGATCTTCACTCCATCTAAAACTACTGGGGCTATTAACCCATTCAATGGAACAATTACAACAACGGAAGGTGTCGTCTATTACACGGTGGATGTTTCAAACGGGGCTGAAAAATTGACTTTTTACTCAGAAAGTTTTGGATCGAACTATGGATACGCATTTTATAACGGCAGTGGGGCATTCATTCCCGGTACCGGACAGTTAGAAAAGTTTGAGGGCTATCAAACGATTGACGTTCCTGTTTCAGCCACTACATTCAGAGTTACGAGTCGACTTGAAACTAACCAAAATGTGACGCTATTTAAAGCTAATTCTTCAGTTCAAAAAAATGCTAAAAATATTAATGATAATTTTGTGAAAAGTTATGGTAACAAAAAATTACTAAAATCAAAAGACTATCAGCATGTCCCATTGCTAATTTCTTCAACAACGGGTAGATGGGTGAAAGTAAACAATTCAAGCGCAGTGCTTATTCCAATTTCAGATGTTGGGAAAGCTGTGAAAATCATGTCAAACGCGTTAAATTCGTCATCTTACACTTTTTTGAAAACTGCAACTGGAAATTCTGGTGATCTTGCTGACTTTGCGACCAGTTATAAGGGCATCAAGAAGTTAAGTGTTGGCGAATATGCCACATTGCAAGTACCAAGTGATGCCGGTTTCTTGTATGTTACAAATAGTTTTGATGACGGCTCAATCCATGATGTCTACCCCAAAGTTACACCAATGTTAGACACCATTGTTACGGTCGCTGCCTCAAACTCATCGGCGCTGGATAAGTCAAGAGCTGACTATGTGGCGACCGGTGCGAATGACCAAGACGTGATTAATCAAGCAATTACATCCTTGGTATATGGTGGAACTATTAAATTATTTGATGGAGATTACAACATAGATGCATTTGGCGACACAAAAACTGCTATTTATTTCCCTAACAATGGCTATGCACGAACCATCAACTTTGAAGGCTCAACTGAAAACAAGAGCTTCCTTTCAGAATATGGGGTCACCATTCATGTTACTAAGACAGCGTTCGACAGTTTGCCAACGACTGGCGACTACAATGTGTTTGCTGGCGACGGCACTACACTTCCAATCGGTGTTTGGCAAGGATTTGCTAATAATGTTAATTTCAAGAATTTCTATCTGAAATTGTACACCTCCCAACGGCAGATGGTTGGAATTAATGGTCAAAACTTCGGATCAATGTACATCGAACAAGTTGGTGTCTATTCCGAAAGTTATTTCACTGATCGCTTCAATCGCTATAAGCCAGTTACCCCTGATATTAATTCAATCGGCATCATCTCTGTCGGTGGCGCAAACGATGAGATGGCACGAATTGGAATGGACACGGTGAATGTTGGTGGTCTTGGTACAGGTATCATCATCGCACGAGCTGAGCATTTGATTGTTAAGAATTCAACAGTATCACGCTCTGTGATTGGCTATAAATTCTCCGGCAATGCTGATAAGCCGTTAACATTGATTAATAATGCTGACGAAGGCAACACGCATTTGCCAGTATTTAAGGGTACTGGATTAATCACATCAATTGACTTTTCAATCGAGCGACTTGATCCAGGAGTGTTCCCCAATGATCCTTCTGGTGATACTAATCCATTCGCCAAAGAGTTAACTCCTGGCGGTTGGAAAGGGACGTTTGATTTTAATATTCAAGGTTCGGGGGCTGGAATTAATCACTTTTGGCAGTCTGGCAGTGGACGCAACATTAAAACTAAAAAAATTAGTTCGGCAATTTCTGGCACGGTTAATCCATCTAATCCGGAATATTTACAAGAATTCTTTAGAACAGATTTGAACAAGAAACTAACATTCAATGGGAATAGTTGGGTTGATTCAATTGGTAATATAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cf774ddd2dd0274134f9fd6367c1f4bc6188be7d8b03fd0c112bbe39434c5f25
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6984
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Population genomics and phylogeography of an Australian dairy factory derived lytic bacteriophage Castro-Nallar,E., Chen,H., Gladman,S., Moore,S.C., Seemann,T., Powell,I.B., Hillier,A., Crandall,K.A. and Chandry,P.S. 2012 22355195 GenBank