Protein

View in Explore
Genbank accession
ATE85645.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MNFVVNNIPDGVPVRVFIDEIGEDNDVTEDFEALKENAIFHVVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLSDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGRIIEYGYYDAGRGYLDIHPDGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVLVGDPIEQGLYLTVESNEVDGVVLKAQNGLGISFSYMSGYPSLSGSTGTIYDPSGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVISVSEGTVTFVVPGNLISKWQQIQPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGRSKTLASVTAEIQYQLLDENSVPYGQIYTAQGTVSGRTSDYNGVTIYADLPVASRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMSPNTQAVQSLIRLARDPDVGGLDLTVRNMDKLLAVQKEIEDYFGDKQAGEFCYTFDDYKTTMQDIVNTIADAIFCTPYRRGADILLDFERPRIGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNTKEVITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNTLKKISVSFSATEEGIFALPNRAVSVVKGSRMSTYDGYITAVNGLTVELSQPVKFTSGDDHSLVLKRRDGGVQSVKVTPGAHDRQVIMAEVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSDGFDSGFN
Physico‐chemical
properties
protein length:828 AA
molecular weight: 91046,43460 Da
isoelectric point:5,10661
aromaticity:0,09662
hydropathy:-0,37681

Domains

Domains [InterPro]
DC_0118
STR
1–662
DC_0118 DC_0808
NF040662
Unmapped
328–808
NF040662
ATE85645.1
1 828
Architecture
STR
RBD
STR 1-662 | RBD 679-821 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATE85645.1
1 828
Domain Start End Length (AA) Confidence
N-terminal 1 205 205 0,9806
Central domain 206 404 200 0,6503
C-terminal 405 828 423 0,1325
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-205
Central
206-404
C-terminal
405-828

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage St162
[NCBI] 		2024312 Uroviricota > Caudoviricetes > Sarkviridae > Cornellvirus > Cornellvirus St162
Host Salmonella enterica sv.
[NCBI] 		2846078 Duplornaviricota > Chrymotiviricetes > Ghabrivirales > Chrysoviridae > Alphachrysovirus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATE85645.1 [NCBI]
Genbank nucleotide accession
MF158037 [NCBI]
CDS location
range 37892 -> 40378
strand +
CDS
ATGAACTTCGTTGTCAATAATATACCGGATGGCGTGCCGGTGCGCGTATTTATCGATGAGATAGGCGAAGATAACGATGTCACTGAGGATTTCGAAGCATTGAAAGAAAATGCGATCTTTCATGTTGTCGAGTCCGCTGGCGGCGGGGCTATTAAAGGTGTCATGAAGATTTTCAGTGTTATTTTAAAACCACTGGCGAAGCTTCTGTCCCCTTCAGTAAAAGGCGCGTCGTCAAACCTCGCCAACTCGCAAGCAGATTCACCAAACAACAGTCTTTCTGACCGTAATAATAAAGCGCGCCCCTATGAGCGTAGCTACGACATTTGCGGGACGGTGCAAACTATACCCAATAACCTCATGTCAACTTATAAAGTGTTTAACGCCGCTGGGCGTATTATAGAATACGGGTACTACGATGCCGGTAGGGGTTATCTTGATATACACCCTGACGGAATAACAGACGGGGACACCCGTGTGTCTGATATCACAGGAACATCAGTTGCCGTCTACGCGCCGTACACGTCGCCAAATAACACGTCAACGCCACAAGTACTGGTCGGAGACCCAATAGAGCAGGGGTTATACCTGACAGTCGAATCTAACGAAGTAGATGGCGTGGTTCTGAAAGCACAAAACGGACTTGGCATCTCGTTTTCTTACATGTCTGGATACCCTTCGTTATCCGGTTCCACCGGCACGATATATGACCCGTCAGGAGGGTCTGACTTCTCCGGTGTTCTTGTGCCAAATGATACGTTTTCTCTCGTATCCGCCTGGACAAATACAGATGTTGACCTTTCCGGTGGCGGCTATCAGGTAATAAGTGTTTCCGAAGGAACTGTTACTTTCGTAGTCCCCGGTAATCTTATAAGTAAATGGCAACAAATACAGCCTGGTTCATTTTTCCGGGGAGATGGCGAAGCATCGTTGCAACCGGACAACACCTATGAAAAAACGTTAACTGATTGGGTGTCCATAAACCGAACTGAGGTGGAACGTATTGTTGCCAACATAGCTGCTGCAAACGGGATGTACAAAGACAATGGTAGGTCTAAAACGTTGGCTTCGGTAACGGCTGAAATACAATACCAACTTCTTGACGAAAATAGCGTACCTTACGGCCAAATTTACACGGCGCAAGGAACCGTATCCGGGCGCACTTCTGACTATAACGGGGTGACTATATACGCAGATTTACCAGTAGCATCTCGTGTTCGCGTTAGGGCGAGAAGGGTAACAGACCTTGATTTCAATTTCGAAGGCTCAGTGGTAGACGAAATAACCTACGTTAACCTGTACGGCCAGACTCGCGATAACACTCCGCACTACGGCAACCGAACCACGGTTCACTCAATGCGTAAACAGACACCGCGCGCTGCCGAAGTTAAACAACCTCAGTTGCGCATGATTGCGACCGAGATGGTGTATAAATATCTCGGGAATGGAGTGTTTGAGGATACGATGTCACCTAACACCCAAGCAGTTCAATCGTTGATTCGCCTCGCCAGGGACCCGGACGTCGGGGGGCTTGACTTAACAGTAAGGAATATGGATAAGTTGCTTGCTGTTCAAAAGGAAATAGAGGACTACTTCGGCGACAAGCAAGCAGGAGAATTCTGTTACACCTTTGACGATTATAAAACAACAATGCAGGATATCGTCAACACTATTGCCGATGCTATTTTTTGCACGCCATACCGTAGAGGCGCTGACATTCTGCTTGACTTCGAGAGGCCTCGTATTGGGCCTGAAATGGTATTTACCCACCGCAGCAAGGCGGGAACCTCCGAAAAATGGACCCGAACTTTCAATGATGCACAGGTTTTTGACAGTTTAAAATTCTCTTACATAGACCCAAAAACTAACACTAAAGAGGTAATAACAATCCCTGAAACTGGCGGTTTGAAGACTGAAACATACGATTCGAAGGGGATACGCAACTATAAGCAGGCTTTCTGGGCTGCAAACAGACGGCACCAGAAAAACACTCTTAAGAAGATTTCGGTATCGTTTAGTGCCACGGAAGAAGGAATATTTGCGCTACCAAACAGGGCTGTTAGCGTAGTGAAAGGCTCCCGGATGTCTACCTATGATGGCTACATAACGGCGGTAAACGGCCTCACTGTGGAGCTGTCACAGCCTGTTAAATTTACGTCAGGGGACGACCACTCTCTTGTTCTCAAGCGGCGAGATGGTGGCGTCCAAAGCGTCAAAGTCACGCCAGGGGCGCACGACAGACAGGTGATTATGGCGGAAGTCCCTCAAGAGGCAATATACACCGGCAACAGCGCTTTAAAAACTGAGTTTTCATTTGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGATCCTGGCGACGACCGAACAGTTAAAATAACAGGGTTTAACTACGACAAGGACTTCTACAAATTTGATAATGTGCCGCCTTTTGGTCGCGCATTCTCGGATGGGTTCGATAGCGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ebf1b2c3b8eeda56e4bb38bd7d33901602b594e94b3ed388ef3e9397efb09e29
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3028
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank