Protein

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Genbank accession
AJA42677.1 [GenBank]
Protein name
CopG family transcriptional regulator
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MYPGSIDKFTEKLNKIDGNVYVIEEEIILINGVYEGELEHDNVNSSSVRVYTGPKLTGDKIENFILSTPSGTLWKKEIKIFAKVDKCYITYETPGDTVEADDINKVQGSIVKTQIEIEQVKKETKNLDKNKVDNIIGKQLSTEDYSTEEKKKLRGIEDNANNYIHPLTHLADMIEETDTKQFVTQAEKDKWNSINDSKGCVKSVNNKTGDVMLNASDVGAEPSINKKTGFNLDKSDSVTSTSSSTLATSKAVKSAYDKALQAFQLVSDGKLKIATAITDKGITTSSSDTFQKMADNINNISINGDLRKTYLKPFSKLTGNIRYINSSRELMYIIPGAHKLDIYNFNGVKIKSMEYPYHDNKINNSVFGVDSFIYGGYYSNYNWFICSYNGTRLREIDGSNWGFPGQYIVPLNKNGDYMYEGDFYDVSGTKKQNMLSEGNQEVVLALTDEIIIHIYKSRNNILVSYKKEDVNEIKELARWEGMEIKDICFS
Physico‐chemical
properties
protein length:490 AA
molecular weight: 55259,49230 Da
isoelectric point:5,45696
aromaticity:0,09388
hydropathy:-0,56286

Domains

Domains [InterPro]
DC_0868
STR
3–390
DC_0868
Coil
Unmapped
103–130
Coil IPR005068
AJA42677.1
1 490
Architecture
STR
STR 3-390 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AJA42677.1
1 490
Domain Start End Length (AA) Confidence
N-terminal 1 292 292 0,9311
Central domain 293 479 188 0,7992
C-terminal 480 490 10 0,1460
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-292
Central
293-479
C-terminal
480-490

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiCT9441A
[NCBI] 		1567014 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium tetani ATCC 9441
[NCBI] 		1172203 Bacteria > Firmicutes > Clostridia > Clostridiales > Clostridiaceae > Clostridium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AJA42677.1 [NCBI]
Genbank nucleotide accession
KM983329 [NCBI]
CDS location
range 35700 -> 37172
strand +
CDS
TTGTACCCAGGAAGTATAGATAAATTTACAGAAAAACTAAATAAGATTGATGGCAATGTCTATGTTATAGAGGAGGAAATTATATTAATAAATGGTGTATATGAAGGGGAATTAGAGCATGATAATGTAAATAGTTCTAGTGTAAGAGTATATACTGGTCCTAAACTTACAGGAGATAAGATAGAGAATTTTATTCTTTCTACACCAAGTGGTACCCTATGGAAAAAGGAAATAAAAATCTTTGCTAAAGTAGATAAGTGCTATATAACTTATGAAACCCCAGGCGACACAGTAGAAGCAGATGATATTAATAAAGTGCAAGGCAGTATAGTAAAAACACAAATAGAAATAGAACAAGTAAAGAAAGAAACTAAAAATTTAGATAAAAATAAAGTAGATAATATAATAGGAAAACAGTTAAGTACAGAGGATTATAGTACTGAAGAGAAAAAGAAGCTTAGGGGAATAGAAGATAATGCTAATAACTATATTCATCCTTTAACACATTTAGCTGATATGATTGAGGAGACTGATACAAAGCAATTTGTAACCCAAGCAGAAAAAGATAAATGGAATAGCATTAATGACAGTAAAGGATGTGTTAAATCCGTAAACAACAAAACAGGTGATGTGATGCTTAATGCCTCTGATGTGGGTGCAGAACCTAGCATAAATAAGAAAACAGGGTTTAACCTTGATAAAAGTGATAGTGTTACTTCTACATCATCTTCTACGTTAGCAACAAGTAAGGCTGTCAAATCCGCATATGATAAAGCACTACAGGCTTTTCAATTAGTCAGTGATGGAAAATTAAAAATTGCTACTGCAATCACTGACAAAGGAATTACAACGAGCAGTAGTGATACGTTTCAGAAGATGGCTGATAATATAAATAATATAAGTATAAATGGAGACTTAAGGAAAACATATCTAAAACCATTTAGTAAGCTAACCGGTAATATTCGATACATAAATTCATCCAGAGAACTTATGTATATTATACCAGGAGCACATAAATTAGATATATATAACTTTAATGGGGTAAAGATAAAAAGTATGGAATATCCATATCACGATAATAAAATAAACAACAGTGTATTCGGGGTAGATTCATTTATATATGGTGGATATTATAGTAACTACAATTGGTTTATTTGTAGTTATAATGGTACAAGGTTGAGGGAAATTGATGGAAGCAATTGGGGATTTCCTGGACAATATATTGTACCACTAAACAAGAATGGTGATTATATGTATGAAGGAGATTTTTATGATGTGAGTGGAACTAAAAAACAAAATATGTTAAGCGAGGGCAATCAGGAGGTAGTTCTTGCATTAACAGATGAAATTATTATACATATTTATAAATCTAGGAATAATATCCTTGTTTCATACAAAAAAGAAGATGTAAATGAAATAAAAGAACTGGCAAGGTGGGAAGGCATGGAAATTAAAGATATATGTTTTAGTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e5e3fcf6a839e5d74ea4f26fc03f2be0098f160e1afc8b4bf9f44b7e0c1b561a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6993
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic diversity of Clostridium tetani strains Cohen,J.E., Wang,R., Shen,R. and Keller,J.E. 2017-08-11 — GenBank