Protein

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Genbank accession
XMR02071.1 [GenBank]
Protein name
E3 ubiquitin-protein ligase HERC1
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFVRMFDYGNVVERPVGTRYTCSDYSATYSLIKDGVLYVSGMNNYYQLGNNTNVTRYNEWLKVPETDSVKFCSTGYSQTMYLTNNGRIMIAGEDPTFGATAVSVKVWTDITSRFSAVDTTKIVYISIERYGVMMIMQDGSVWACGVDNTGWSGQGSKTVGFFTFRQIYTGSAGNAVACIAGTGTSRILLVDGTILSAGTNTYHQCNASTDLAVLTYTESFPGVDPSLIYQIKMCNNNCIIFLSDKRYYGTGWGSFGALGDGDITGSNNKFYAGTLSVAPKNMRAYMSYLCSSSGDSSMYIGDDNFIYTCGYRGRNLINATTDIGTFTKCIQSAQGYKNGLIYSGNYCAVVFDPDLGTGMTYAVSSPKVNAPAPQASVPTLGMSSLQAIILP
Physico‐chemical
properties
protein length:393 AA
molecular weight: 42577,61940 Da
isoelectric point:5,88053
aromaticity:0,12214
hydropathy:-0,03257

Domains

Domains [InterPro]
DC_0433
ATT
1–135
DC_0433
IPR009091
STR
14–103
IPR009091 IPR009091
IPR009091
STR
24–269
IPR009091
IPR051553
Unmapped
30–363
IPR051553
XMR02071.1
1 393
Architecture
ATT
STR
ATT 1-135 | STR 136-363 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR02071.1
1 393
Domain Start End Length (AA) Confidence
N-terminal 1 218 218 0,0802
Central domain 219 382 165 0,7587
C-terminal 383 393 10 0,5474
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-218
Central
219-382
C-terminal
383-393

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey5
[NCBI] 		3375711 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR02071.1 [NCBI]
Genbank nucleotide accession
PQ471516 [NCBI]
CDS location
range 337547 -> 338728
strand -
CDS
ATGTTACCTTTTGTTAGAATGTTTGATTATGGGAACGTCGTTGAGCGACCTGTGGGTACACGTTATACCTGTAGTGACTATAGTGCGACTTATAGTTTAATAAAGGATGGTGTGTTATATGTATCTGGGATGAATAACTATTATCAGTTAGGTAATAACACTAACGTAACACGTTACAACGAGTGGTTAAAAGTTCCAGAGACTGATAGTGTTAAGTTTTGTAGTACTGGTTATAGTCAGACAATGTATCTGACTAACAATGGTAGGATAATGATAGCAGGGGAAGATCCTACTTTCGGTGCGACGGCGGTGAGTGTAAAGGTTTGGACTGATATAACTTCTAGATTTAGTGCAGTTGATACTACGAAGATTGTCTATATTTCAATAGAACGTTATGGTGTAATGATGATCATGCAAGATGGTTCAGTATGGGCATGTGGTGTTGATAATACTGGTTGGAGTGGACAGGGGAGTAAGACTGTTGGTTTCTTTACTTTCAGACAAATATACACCGGAAGTGCAGGTAATGCTGTTGCTTGTATTGCTGGTACTGGCACTTCGAGGATTCTATTAGTTGATGGTACAATATTGTCTGCTGGTACTAATACATATCATCAATGTAATGCTAGTACTGATCTGGCTGTTCTAACATACACTGAATCATTCCCTGGGGTTGATCCTTCATTGATATATCAAATCAAGATGTGTAATAACAACTGTATTATATTTTTGAGTGATAAGAGATATTACGGTACTGGCTGGGGAAGTTTTGGTGCATTGGGTGATGGTGATATTACGGGTTCGAATAATAAATTCTATGCAGGTACATTGTCAGTTGCTCCTAAAAACATGCGTGCTTATATGTCGTATCTATGTAGTTCTTCTGGGGATTCTAGTATGTACATAGGCGATGATAATTTCATATACACCTGCGGTTATCGTGGGAGGAACTTAATAAATGCCACTACAGATATTGGTACGTTCACGAAATGCATTCAAAGTGCACAAGGATACAAGAATGGACTTATATATAGTGGGAATTATTGTGCTGTAGTTTTTGATCCAGATTTGGGTACAGGAATGACTTATGCGGTTTCATCACCAAAAGTGAATGCACCAGCACCACAGGCGAGTGTTCCAACATTGGGTATGAGTTCGTTACAAGCTATTATTTTACCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3735abee010998b07dec978322e00bbd8594cdfe3c4155d17aa650f675ba8d12
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7491
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank