Protein

View in Explore
Genbank accession
WRW34454.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MILRLFLDFPVELGQEFRYKTVENFKRIVNAHGRLVDDLEYHRKEEKHAHDAKQIDYTTSYSRSVSDALDKQNNRINNLVVGANGDAMAEVKDSRVALDGTISELLSQRLDYDFGKLNKKIDDNFKYLNDKIERIVNVNDYGADPTGQKDSTLAFQKAFGEGHRHVHMTEGTYIISGIKMPNYTILSGEGKGITYLRIADDAPAETIGITNLNMDGTAEYIGVDNFTIDGNRTRQGNTLSPAGGSRSSNIRFAGVKHGFAYSVESFSSLLHGIDVTYASDDYFYQGDGIRVNEALESKYIHIQECETYDFGDDGITTHHSRYLILQNNYSHDPVKDSGNHNGIEVDDGSQHVFVMGNKTEKCFGGLEIKAHEPTSAASDVVVSDHIDIKSIRSYNIRHIGHHRAGDVQSKTAYNIMLNNCTSLYPQYNGSYENTTPRAMVICAYRNVVVNNFTAIGDGNFMANMPVIAVQFRAENVMLNNINVSGFKNSLADVKVFGGANRPKKVSLSNINIVNSSNNRGIAGGGKIYDLRIINANLQGNGTGNGVELYNNTAEIVGVSAENYKRPAMIAGKEYFYMPTSLKGGFSGGSTGSAAIAERSAVIASTGGSFAHSNRSFVIGSGAGSIANGSRSGVISSLSSVIEPGGHTRMIINSKNMKNSENYHIKAGYGADGPPSESNTKLDISTFTGTIKTAGQVQSGQNFGDYAEYFESQSGMAIPTGNIVTLDGRFIRKAQVNDIPIGVISETAGVILGDQMFHHKDKYLKNEFGGVITESVKKEWQDDAGNWYSDTVEMPVKNPDFDERDEEEYLSRAERPEWNVVGLIGQVYIRIDGTVKENDYIKPVNGVGTKDNINGYYRVEQITTPYDNDKGYGVAIAFIHPITPSIINKGSVK
Physico‐chemical
properties
protein length:892 AA
molecular weight: 97815,64810 Da
isoelectric point:5,83187
aromaticity:0,08857
hydropathy:-0,45011

Domains

Domains [InterPro]
DC_0125
ATT
1–216
DC_0125 DC_0616 IPR021865
IPR012334
STR
119–579
IPR012334 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR011050
STR
133–485
IPR011050 G3DSA:4.10.80.40
IPR024535
ENZ
135–366
IPR024535
WRW34454.1
1 892
Architecture
ATT
STR
RBD
ATT 1-216 | STR 217-648 | RBD 649-878 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WRW34454.1
1 892
Domain Start End Length (AA) Confidence
N-terminal 1 150 150 0,9929
Central domain 151 658 509 0,9876
C-terminal 659 892 233 0,9087
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-150
Central
151-658
C-terminal
659-892

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage CF9
[NCBI] 		3113741 Uroviricota > Caudoviricetes > Sextaecvirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WRW34454.1 [NCBI]
Genbank nucleotide accession
PP034389 [NCBI]
CDS location
range 25954 -> 28632
strand +
CDS
ATGATTTTGAGATTATTTTTAGATTTCCCTGTTGAATTAGGGCAAGAGTTTAGATATAAAACAGTAGAAAATTTCAAAAGAATCGTTAATGCTCATGGGCGTTTAGTTGATGATTTAGAATACCATAGAAAAGAAGAAAAGCACGCACATGATGCTAAACAAATTGATTACACAACAAGTTATTCAAGAAGTGTTAGTGACGCATTAGATAAACAGAACAATAGAATCAATAATCTAGTAGTCGGTGCAAATGGAGATGCTATGGCAGAAGTTAAAGATAGCCGAGTTGCATTAGACGGAACAATAAGTGAATTGCTTTCACAAAGATTAGATTATGATTTTGGTAAATTGAATAAAAAAATAGATGATAACTTTAAGTACCTTAACGATAAGATTGAACGTATTGTTAATGTTAATGATTATGGCGCTGACCCTACAGGTCAAAAAGATTCAACATTAGCATTTCAAAAAGCATTTGGAGAAGGTCATAGACACGTTCATATGACAGAAGGTACTTATATTATATCTGGTATTAAAATGCCTAACTACACTATTTTAAGTGGAGAAGGTAAAGGGATAACATATTTAAGAATTGCTGATGATGCTCCAGCTGAAACAATTGGTATAACTAACTTAAATATGGATGGAACAGCTGAATATATCGGTGTTGATAATTTCACAATTGATGGAAATAGAACAAGACAAGGAAACACGTTATCTCCAGCTGGTGGTTCACGTTCAAGTAATATTAGATTTGCTGGTGTTAAGCATGGTTTTGCATATTCTGTAGAATCATTTAGTAGTTTATTACATGGTATTGATGTAACGTACGCTAGTGATGATTATTTCTATCAAGGAGACGGAATCAGAGTAAATGAAGCATTAGAAAGTAAATACATTCATATACAAGAATGTGAAACTTATGATTTCGGAGATGATGGTATCACTACTCATCATAGTAGATACTTAATTCTACAAAATAATTATTCACATGACCCAGTAAAAGATAGTGGGAACCATAACGGTATTGAAGTAGACGATGGTTCACAACATGTATTTGTTATGGGTAACAAAACAGAAAAATGTTTTGGTGGTTTAGAAATCAAAGCACACGAACCTACAAGCGCAGCAAGCGATGTTGTTGTAAGTGACCATATTGATATTAAAAGTATTCGTTCTTATAATATTCGTCATATCGGACATCATAGAGCTGGGGATGTACAATCTAAAACAGCTTATAATATTATGTTGAATAACTGTACTTCATTATATCCACAATATAATGGTTCATATGAGAACACAACACCAAGAGCAATGGTTATTTGTGCTTACAGAAATGTAGTCGTTAATAACTTTACAGCTATTGGCGATGGCAACTTTATGGCAAATATGCCAGTTATTGCTGTTCAATTCAGAGCTGAAAATGTTATGCTTAATAATATTAATGTAAGTGGTTTCAAAAATTCATTAGCTGATGTTAAAGTATTTGGTGGAGCAAATAGACCTAAAAAAGTATCATTATCTAATATCAACATTGTTAATTCATCTAACAATAGAGGTATTGCAGGCGGTGGAAAAATTTATGATTTAAGAATTATAAATGCTAACTTGCAAGGTAATGGTACAGGAAATGGTGTTGAATTATATAACAACACGGCTGAAATTGTTGGAGTAAGTGCTGAGAATTATAAAAGACCAGCTATGATTGCTGGAAAAGAGTATTTTTATATGCCCACAAGTCTTAAAGGAGGATTTAGTGGAGGGAGTACAGGTAGTGCAGCTATTGCTGAAAGAAGTGCTGTTATTGCCTCTACTGGTGGTTCCTTTGCTCATAGTAACCGTTCTTTTGTTATAGGCTCTGGTGCTGGTAGTATTGCTAATGGTTCACGTTCTGGTGTTATTAGTTCATTGTCATCTGTTATTGAGCCAGGCGGACATACTAGAATGATTATTAATAGTAAAAACATGAAAAACAGTGAAAACTATCACATTAAAGCTGGTTATGGAGCTGACGGTCCACCAAGTGAATCAAATACTAAACTTGATATTAGTACATTTACTGGTACAATCAAGACAGCAGGACAAGTTCAATCTGGACAAAACTTTGGGGACTATGCCGAGTATTTTGAATCACAAAGTGGTATGGCAATTCCTACTGGTAATATAGTTACACTTGATGGCAGATTTATAAGAAAAGCACAAGTCAATGATATTCCAATCGGTGTTATATCTGAGACAGCAGGAGTTATTTTAGGGGACCAAATGTTCCATCACAAAGATAAATATCTTAAAAATGAGTTTGGCGGAGTCATTACTGAAAGCGTCAAAAAAGAATGGCAAGATGATGCTGGTAATTGGTATTCAGATACAGTAGAAATGCCAGTTAAAAATCCAGATTTTGACGAACGAGACGAAGAAGAATATCTATCTCGTGCTGAACGACCAGAATGGAACGTTGTAGGTCTTATAGGTCAAGTATATATTAGAATAGATGGTACTGTCAAAGAAAATGATTATATTAAGCCAGTAAACGGTGTCGGAACTAAAGATAATATTAATGGTTATTATAGAGTTGAACAAATTACTACCCCATATGATAACGATAAAGGTTATGGTGTGGCAATTGCATTTATCCACCCTATTACACCAAGCATAATTAATAAAGGAAGTGTTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
76b0bb70c5dae9f5850a8fbd60c9adfcdca35bffe39334d22f0488e7dc74130d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3071
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Characterisation of Novel Lytic Bacteriophages for therapeutic applications in Prosthetic Joint Infections Burton,N., Melo,L.D.R., Pearce,B., Tadesse,M.D., Vryonis,E. and Sagona,A. 2024-01 — GenBank