Protein

View in Explore
Genbank accession
YP_010106514.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MANNKVLRLDITKTPDLVPTIYGRVADGLVQTVDVYVTNNGEPFDITGWTIKFEGNTSGNRTFIADSEHIKVIDAKGGFFQYTFPLPAFANSGKYERAYFSFALDEKHESSNNFNIQVFKNADITVEEAHTVITEYEKLVDELNKIFIEAQEDLTNDVEEYKQWLTQQVQELQNKIDILNTNYEAAEARVTELEKRLQELINKGLLKMEDVVFFMQGKTTVTIDGQEITINDVMPTFDYLKNNYYTKTEVDQKDAVLDTKIDGVQTNLNNAKTDLENKIEQTYNAQPLPSGVTSLSALSDYSGKTFYITKSQMDALTDNSDLPAEIVGSYNYIVENSESRAGTYRQQFVYTTSVSKRDRYSRVILNGGSKTPFERIITEHKYGLLEFKDAVVNVQDWDTLTATGVYTVYNASGANKPPGGVYGTLVVLADNATVTQEYTSGGKRFIRTRAGSPAVWKDWAELVSKTMMDSELKLRDNEIEAIKTKKVRWEGWFDKGNNVSPIRNKSRLGWGDLNTTVAQVDGVPMDDVPFEFSRLYFKALRDVKFWIEGSVRAQGPAAADTSRWVYWHLRINTDQSETTGTAIHVASTNGQNGGVLQWKNFGSFGTIVTMKAGEYMAFSVDLEDGKQILQADLQWVHVKCLN
Physico‐chemical
properties
protein length:642 AA
molecular weight: 72401,16890 Da
isoelectric point:5,01282
aromaticity:0,10592
hydropathy:-0,45202

Domains

Domains [InterPro]
DC_1249
STR
1–448
DC_1249 DC_1115
G3DSA:2.60.40.3350
ATT
5–123
G3DSA:2.60.40.3350 Coil Coil Coil cd19958
IPR018913
ATT
6–144
IPR018913
YP_010106514.1
1 642
Architecture
ATT
STR
RBD
ATT 1-144 | STR 145-462 | RBD 475-642
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterococcus phage vipetofem
[NCBI] 		2719594 Uroviricota > Caudoviricetes > Andrewesvirinae > Vipetofemvirus vipetofem >
Host Enterococcus faecalis
[NCBI] 		1351 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010106514.1 [NCBI]
Genbank nucleotide accession
NC_055834 [NCBI]
CDS location
range 19362 -> 21290
strand +
CDS
ATGGCAAATAATAAAGTTTTGCGATTAGATATTACAAAGACTCCTGATTTGGTGCCAACTATTTACGGACGCGTCGCCGACGGTTTAGTTCAAACTGTCGACGTTTACGTCACAAATAATGGTGAACCATTCGATATTACAGGATGGACAATCAAATTCGAAGGAAATACTAGCGGCAATAGAACATTTATTGCAGATTCTGAACATATTAAAGTCATCGATGCAAAAGGAGGTTTTTTCCAATATACTTTCCCACTTCCTGCATTTGCTAATAGTGGAAAATATGAAAGAGCATACTTCTCATTTGCATTAGATGAAAAACATGAAAGTTCAAACAATTTTAATATACAAGTTTTTAAAAATGCTGATATTACAGTTGAAGAAGCACATACTGTTATTACAGAATATGAAAAATTAGTTGACGAATTGAATAAGATTTTCATTGAAGCACAAGAAGATTTAACCAATGATGTTGAAGAATATAAACAATGGTTAACTCAACAAGTGCAAGAACTTCAAAATAAAATCGATATTTTAAATACAAATTATGAAGCAGCAGAAGCAAGAGTAACTGAATTAGAGAAAAGATTACAAGAATTAATCAATAAAGGTCTATTAAAAATGGAAGACGTTGTGTTCTTTATGCAAGGAAAAACAACGGTTACTATTGATGGACAAGAAATAACGATTAATGATGTGATGCCAACATTTGATTATTTAAAAAATAATTATTACACTAAAACTGAAGTCGACCAAAAAGACGCTGTTTTAGATACAAAAATTGATGGAGTTCAAACAAATTTAAATAACGCTAAAACAGATTTGGAAAATAAGATTGAACAAACTTATAATGCTCAACCATTGCCAAGTGGTGTCACTTCATTAAGTGCACTATCTGACTATAGTGGAAAAACTTTTTATATCACTAAATCACAAATGGATGCATTAACGGATAATAGTGATTTACCAGCAGAAATTGTTGGAAGTTATAATTATATCGTTGAAAATAGTGAGTCAAGAGCTGGAACTTATAGACAACAATTTGTATATACAACAAGTGTTTCTAAAAGAGACAGATATTCACGCGTAATTCTTAATGGTGGATCGAAAACTCCATTTGAAAGAATTATCACTGAACATAAATATGGTCTTTTAGAATTTAAAGACGCTGTTGTAAATGTTCAAGACTGGGATACATTAACTGCAACTGGAGTTTATACTGTTTATAATGCTAGTGGAGCAAATAAACCACCTGGTGGAGTATATGGAACATTAGTTGTTTTAGCTGATAATGCAACAGTTACACAAGAATATACTTCAGGTGGAAAACGTTTTATTAGAACAAGAGCAGGTTCTCCAGCTGTATGGAAAGACTGGGCAGAATTAGTCTCTAAAACAATGATGGATAGTGAATTAAAATTAAGAGATAATGAAATAGAAGCTATAAAAACTAAAAAAGTTCGTTGGGAAGGTTGGTTCGACAAAGGGAATAATGTTTCTCCAATTCGAAATAAAAGTAGATTAGGATGGGGAGATTTAAACACAACAGTCGCCCAAGTAGACGGCGTTCCCATGGATGATGTACCTTTTGAATTTAGCCGCCTTTATTTTAAAGCTTTACGGGATGTAAAATTTTGGATTGAAGGAAGCGTCAGAGCCCAAGGACCCGCTGCTGCTGATACTTCAAGATGGGTATACTGGCATCTTAGAATTAATACAGACCAAAGTGAAACAACTGGAACTGCCATTCATGTCGCTTCAACAAATGGCCAAAATGGTGGAGTATTACAATGGAAAAACTTTGGTTCATTTGGGACAATAGTAACAATGAAAGCTGGAGAATATATGGCTTTTTCAGTTGATTTGGAAGATGGAAAACAAATATTACAAGCGGATTTACAATGGGTACATGTTAAATGTTTAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
34e15adf46a8b29f5fe3eb9d9fc7c7ebdd379cbaae1e438b43ef9b9caa150833
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7734
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential Olsen,N.S., Hendriksen,N.B., Hansen,L.H. and Kot,W. 2020 — GenBank