Protein

View in Explore
Genbank accession
ABF71274.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,74
Protein sequence
MPGIIETISLIVSSLATTTALANALYLGTSALLYGGIAAGALALQGAFASKPAVPKPDDGSYNLKQSVPSLPYVLGRVKKGSDYVFLEEKGGKAHHIMVWAGHRIHAFVSHYLHDEKATLNVDGGVTEPGHYDKDGVSFVHIKTKLGLNAETAYSDVVTAFPTIWDNNCRGDGLASVYMTCRTVDQKDFLDVYPNQMPEHSAVGDGALLYDPRKDSTQGGSGAHRYNNPLTWEFSSNLALMRLWHLCHPVGGKMAYENMYLPDWANAANVCDQNVTNRSGATEKRYHGGFWFRASNDPIEVGRIMDEAAEIVVYERADGKIGVHAGEFVAPDVRLEAKSIYSIRVDKNKRRANTVLGVRGRYVNTAKDYITEDAAIYGDPYAVVDDSTERTRTFDNAAIQSHNHCQRKQKLTFVRANARRVSVVADYTADGVRDIPYRRFVTVHYPSRGLAEAVVEITSSVTIDLRNMRISFSGIIVSPSLYAFNAATEEGEPGESVEPLPDEGVPVPTGFVPTIQTEVVSGGATAAFINATWTFVDDTLTYELEYDRTSGSTGVQSVFSVAGDTQVRSGYLVDGEEYRVRLRAWGGGTKSEWTDYVLLTATADPVAPGAVTAVSVDVSTPSEAEFGWTAPNSANYFACRIYINTVDNLGTATLAATEYGPPSATDLRVVTSLAAGTYYGWLRSINPSGIAGTAVATGAFVVT
Physico‐chemical
properties
protein length:703 AA
molecular weight: 76057,15500 Da
isoelectric point:5,44849
aromaticity:0,09673
hydropathy:-0,17326

Domains

Domains [InterPro]
DC_0754
STR
1–701
DC_0754
IPR003961
STR
512–605
IPR003961
IPR036116
STR
519–686
IPR036116
ABF71274.1
1 703
Architecture
STR
STR 1-701 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABF71274.1
1 703
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,9512
Central domain 17 215 200 0,0848
C-terminal 216 703 487 0,3530
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-215
C-terminal
216-703

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage 16-3
[NCBI] 		10704 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sinorhizobium meliloti
[NCBI] 		382 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABF71274.1 [NCBI]
Genbank nucleotide accession
DQ500118.1 [NCBI]
CDS location
range 13703 -> 15814
strand +
CDS
TTGCCAGGCATTATCGAGACCATTTCGCTGATCGTGTCTTCGCTGGCGACGACGACGGCCCTGGCCAACGCGCTCTACCTCGGCACGTCGGCGCTGCTTTACGGCGGCATCGCGGCCGGAGCTCTAGCGCTGCAGGGCGCGTTCGCTTCCAAGCCAGCCGTGCCGAAGCCAGACGACGGCAGCTATAACCTGAAACAGAGCGTTCCGTCGCTGCCTTACGTGCTCGGGCGCGTCAAGAAGGGTAGCGATTACGTCTTTCTAGAGGAGAAGGGCGGCAAGGCGCACCACATCATGGTGTGGGCGGGGCATCGCATACATGCGTTCGTCTCCCACTACCTGCATGACGAAAAGGCCACCCTGAACGTCGACGGTGGCGTGACCGAGCCAGGCCATTACGACAAGGACGGTGTCAGCTTCGTTCACATCAAGACGAAGCTCGGGCTGAACGCCGAAACGGCATATTCCGACGTAGTTACCGCCTTTCCGACCATTTGGGACAACAACTGCCGCGGAGATGGACTCGCGTCTGTCTACATGACGTGCAGGACTGTCGATCAGAAAGACTTTCTGGATGTCTACCCGAACCAGATGCCGGAGCATTCGGCGGTTGGTGACGGCGCGCTTCTGTATGATCCGCGCAAAGACAGCACGCAGGGCGGATCCGGGGCGCACCGCTACAACAACCCACTGACGTGGGAGTTCTCGAGCAATCTGGCGCTGATGCGCCTATGGCACCTCTGCCACCCCGTCGGCGGCAAGATGGCCTACGAGAACATGTATCTGCCCGACTGGGCGAATGCCGCTAACGTCTGTGACCAGAACGTCACGAACCGCAGCGGGGCAACGGAGAAGCGCTACCACGGCGGCTTCTGGTTCCGCGCCAGCAATGACCCGATCGAAGTCGGGCGCATCATGGACGAAGCCGCCGAGATCGTTGTCTACGAGCGCGCCGACGGCAAGATCGGCGTCCATGCCGGTGAGTTCGTCGCGCCCGATGTGCGGCTGGAGGCCAAGAGCATCTACAGCATCCGCGTCGACAAGAATAAGCGGCGCGCGAACACTGTGCTTGGCGTGCGCGGGCGGTACGTCAATACGGCCAAGGACTACATCACTGAAGACGCCGCGATATACGGCGACCCGTATGCTGTCGTCGACGACAGCACGGAGCGCACGCGGACCTTCGACAATGCGGCAATCCAGAGCCACAACCACTGCCAGCGCAAGCAGAAGTTGACGTTTGTCAGGGCGAACGCTCGGCGCGTCTCGGTGGTCGCGGACTACACGGCAGACGGCGTTAGGGATATCCCTTACCGGCGCTTCGTGACGGTGCACTACCCTAGCCGGGGGCTGGCCGAAGCCGTTGTTGAAATCACATCGAGCGTGACGATTGATCTGCGCAACATGCGCATTTCGTTCTCCGGCATTATCGTGTCACCGAGCCTGTACGCCTTCAACGCCGCAACGGAGGAGGGCGAGCCTGGCGAGTCCGTCGAGCCATTGCCCGATGAGGGCGTCCCGGTCCCGACGGGCTTCGTTCCGACGATCCAAACGGAAGTCGTTTCTGGCGGCGCCACGGCGGCATTCATCAATGCGACGTGGACCTTCGTCGACGACACGCTGACTTACGAGCTCGAATACGACCGCACCAGCGGCTCGACGGGCGTGCAGTCGGTGTTTTCAGTTGCTGGCGATACGCAGGTTCGTTCCGGCTATCTCGTCGACGGCGAGGAATACCGCGTCAGGCTGAGAGCATGGGGCGGCGGCACGAAGTCCGAGTGGACCGATTACGTGCTTCTGACTGCTACGGCGGATCCGGTTGCGCCGGGGGCTGTTACGGCGGTCAGCGTGGATGTGTCGACGCCGTCTGAAGCCGAGTTTGGCTGGACCGCGCCGAACAGCGCCAACTACTTCGCCTGCCGCATTTACATCAACACCGTCGACAACCTGGGAACGGCAACGCTCGCGGCGACCGAATACGGGCCGCCTAGCGCGACCGACTTGCGCGTCGTCACGTCGCTCGCCGCCGGCACCTATTACGGCTGGCTTCGGTCGATCAACCCATCTGGCATCGCCGGTACGGCGGTAGCGACTGGGGCGTTTGTCGTGACGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2b9cbcb77b29e91326e59fab34940737614c2de82742b74eaf75d0df3624e5cf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8750
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Related repressor specificity of unrelated phages Dallmann,G., Papp,P.P. and Orosz,L. 1987 — GenBank
Nucleotide sequences of the sites involved in the integration of phage 16-3 of Rhizobium meliloti 41 Dorgai,L., Papp,I., Papp,P., Kalman,M. and Orosz,L. 1993 8386836 GenBank
The bacterial attachment site of the temperate Rhizobium phage 16-3 overlaps the 3' end of a putative proline tRNA gene Papp,I., Dorgai,L., Papp,P., Jonas,E., Olasz,F. and Orosz,L. 1993 7689141 GenBank
Identification of site-specific recombination genes int and xis of the Rhizobium temperate phage 16-3 Semsey,S., Papp,I., Buzas,Z., Patthy,A., Orosz,L. and Papp,P.P. 1999 10400574 GenBank
Site-specific integrative elements of rhizobiophage 16-3 can integrate into proline tRNA (CGG) genes in different bacterial genera Semsey,S., Blaha,B., Koles,K., Orosz,L. and Papp,P.P. 2002 11741858 GenBank
Binding sites of different geometries for the 16-3 phage repressor Papp,P.P., Nagy,T., Ferenczi,S., Elo,P., Csiszovszki,Z., Buzas,Z., Patthy,A. and Orosz,L. 2002 12084925 GenBank
immX immunity region of rhizobium phage 16-3: two overlapping cistrons of repressor function Csiszovszki,Z., Buzas,Z., Semsey,S., Ponyi,T., Papp,P.P. and Orosz,L. 2003 12867446 GenBank
H protein of bacteriophage 16-3 and RkpM protein of Sinorhizobium meliloti 41 are involved in phage adsorption Putnoky,P., Deak,V., Bekasi,K., Palvolgyi,A., Maasz,A., Palagyi,Z., Hoffmann,G. and Kerepesi,I. 2004 14996788 GenBank
Identification of cohesive ends and genes encoding the terminase of phage 16-3 Ganyu,A., Csiszovszki,Z., Ponyi,T., Kern,A., Buzas,Z., Orosz,L. and Papp,P.P. 2005 15774897 GenBank
Identification of tail genes in the temperate phage 16-3 of Sinorhizobium meliloti 41 Deak,V., Lukacs,R., Buzas,Z., Palvolgyi,A., Papp,P.P., Orosz,L. and Putnoky,P. 2010 20081029 GenBank