Protein

View in Explore
Genbank accession
AUM57596.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MSRELMPKSGIMMPHVVVNRDAAVVGVSTVDGVAGAIDLTGKYLQKTDASATYQTKTEGASKTYVLDSIQPIMEGALFKADPFVDNNVPFRSAGANGVESVDMMKVTTDNSIKIGSYASSVQGVEIHSAGRVQVVDQNDGGVETKYPIYSKRFRPEIEDLPFAAIGSYVKDSQGRTIGVNRTGINSDIKQFTQKVTFSEPVTVPDAVGDYDAVTLRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVTSDGQLLSRSEYPDLWAYAQLLTPISDADWLADPQKRGKYSTGDGSTTFRVPDRNGVQSGSIKELFGRGDGGSSSTAGTIYEAAAPDIGGAAAGVSQGTYAQIFGTAVRGAFFTDNGLYPQGAGETIPGGTGATEGRQNTLNFLASRSNATYGRYGVSDNILPRNFIGVWTIRAHGGFVAANTSWSVINGDTSMPPSGVSVDGGYIRSVYNVAGSPVAEFAVRAVANSNGYYARAYTRNHTDNTSGYFDFHENGEFAAAEFRGQRITLNDNNWPGVVMKPFSANPSALGGVTLIESNIGAAASDVSRVSLIRRRVDGVTGSITVGFPQTAGTLALQGTSGINFKKDIVDADANEALDRITNQRLVNFVYKDDEQERVRFGVIAEEAELIAPQYIKHNQESYEDILDEEGNKIGEKTRDRPSVDVNPIVMDLMGCVQALTKRIEAMEAEIAELKSNK
Physico‐chemical
properties
protein length:711 AA
molecular weight: 75989,48820 Da
isoelectric point:5,07898
aromaticity:0,08298
hydropathy:-0,30239

Domains

Domains [InterPro]
DC_1514
STR
20–335
DC_1514 DC_0203
SSF88874
STR
255–431
SSF88874 IPR030392
DC_2049
STR
315–524
DC_2049 IPR030392 Coil
AUM57596.1
1 711
Architecture
STR
RBD
STR 20-524 | RBD 560-711
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUM57596.1
1 711
Domain Start End Length (AA) Confidence
N-terminal 1 108 108 0,6476
Central domain 109 307 200 0,4056
C-terminal 308 711 403 0,9239
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-108
Central
109-307
C-terminal
308-711

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage LAMP
[NCBI] 		2065191 Uroviricota > Caudoviricetes > Mktvariviridae > Kuravirus > Kuravirus LAMP
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUM57596.1 [NCBI]
Genbank nucleotide accession
MG673519.1 [NCBI]
CDS location
range 12718 -> 14853
strand +
CDS
ATGTCTAGAGAATTAATGCCTAAATCCGGTATAATGATGCCACATGTAGTGGTTAACCGAGATGCTGCGGTAGTAGGTGTCTCCACTGTAGACGGAGTGGCTGGTGCAATTGATCTTACTGGTAAGTATCTACAGAAAACAGATGCGTCAGCTACCTATCAAACAAAAACTGAAGGTGCTTCTAAGACTTATGTTTTAGATTCTATTCAACCTATCATGGAAGGTGCTTTATTTAAAGCTGACCCTTTCGTAGATAACAACGTCCCTTTCCGTTCCGCTGGGGCTAATGGTGTAGAGTCTGTGGATATGATGAAAGTCACCACTGATAACTCAATCAAGATTGGTAGTTATGCTTCCTCAGTTCAAGGAGTAGAGATTCATTCTGCTGGTCGTGTTCAGGTTGTTGACCAGAATGACGGTGGTGTAGAAACTAAATATCCTATCTATTCTAAGCGTTTCCGTCCTGAGATTGAAGATTTACCTTTTGCTGCAATCGGTTCTTATGTTAAGGATTCTCAAGGTCGTACCATTGGAGTAAATCGAACTGGTATCAACTCTGATATCAAACAGTTTACTCAGAAAGTAACTTTCTCTGAACCAGTTACTGTTCCTGATGCTGTTGGTGATTATGATGCTGTTACACTAAGACAGCTTCGTAACAGTGGTGGAGGTTCTGGTGGTCCTACCATGAGCGGTATCTCCAACTTTGGTATTGGTGATTTCCATCTTCGTGATAGTCGTGCTTTTATCCCAGCTTTTGAAGTAACCTCTGATGGACAGCTTCTCAGTCGTTCAGAGTATCCAGACCTTTGGGCTTATGCTCAACTGTTGACACCTATCTCGGATGCTGATTGGTTGGCTGATCCTCAGAAACGTGGTAAATACTCAACAGGTGATGGTTCTACTACTTTCCGTGTCCCTGACCGAAATGGTGTCCAATCAGGTTCAATTAAAGAGTTGTTTGGGAGAGGGGACGGAGGATCTTCCTCTACCGCAGGTACCATATATGAAGCAGCAGCGCCAGACATTGGAGGGGCAGCAGCTGGCGTATCTCAAGGTACTTATGCGCAAATTTTTGGTACAGCAGTAAGAGGTGCGTTTTTCACAGATAACGGACTGTATCCTCAAGGAGCTGGTGAAACAATACCGGGTGGTACTGGTGCAACTGAAGGTCGTCAGAATACTCTGAATTTCCTAGCAAGTAGATCTAATGCTACTTATGGGAGATACGGTGTTTCAGATAACATCCTCCCTCGTAACTTCATCGGTGTTTGGACCATCCGTGCTCATGGTGGGTTCGTAGCTGCTAATACTTCTTGGTCTGTTATTAACGGCGACACGTCAATGCCACCTTCCGGAGTTTCAGTAGACGGTGGTTACATACGTAGTGTGTACAATGTGGCCGGTTCTCCGGTAGCAGAGTTCGCTGTCCGAGCGGTTGCAAACTCTAACGGTTATTATGCCAGAGCGTACACGAGAAACCATACTGACAACACGTCGGGGTACTTTGATTTCCATGAGAATGGAGAGTTCGCTGCGGCTGAGTTCCGTGGTCAAAGAATTACCTTGAATGATAATAACTGGCCGGGAGTGGTGATGAAGCCTTTTTCGGCTAACCCATCTGCTCTCGGTGGTGTCACTCTTATCGAATCCAACATTGGAGCCGCTGCTAGTGATGTCTCCCGTGTGAGTCTGATTAGACGGAGGGTTGACGGTGTTACAGGTTCGATTACCGTTGGTTTTCCGCAGACAGCAGGTACTCTGGCTCTCCAAGGTACTTCTGGCATCAATTTTAAGAAGGATATTGTTGATGCTGATGCTAATGAAGCACTCGATAGAATCACCAACCAGCGTTTGGTCAACTTTGTCTATAAAGATGATGAGCAAGAACGTGTTCGATTCGGTGTTATTGCTGAAGAAGCAGAGTTAATTGCACCGCAATACATCAAACACAATCAGGAATCTTACGAGGACATTCTTGACGAAGAAGGGAATAAGATTGGCGAGAAGACAAGGGACAGACCTTCCGTCGACGTCAACCCAATCGTCATGGATTTGATGGGGTGTGTTCAGGCGCTGACTAAAAGGATTGAGGCGATGGAAGCCGAGATTGCTGAACTCAAATCTAACAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
aec346910af2bf9c16bcd101d8c5926045803e497a3e8d3d1c1dc09fda54cd46
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6217
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel LAMP bacteriophage infecting Escherichia coli Golomidova,A.K., Letarov,A.V., Kostryukova,E.S., Babenko,V.V. and Prokhorov,N.S. 2018-01-18 — GenBank