Protein

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Genbank accession
QHZ59488.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,75
Protein sequence
MTTKVIFTFHSPDGSPQANEKFTVRLTRPGMSDAEHCVVIPETYEMVTDAKGEFTMDLESSTSAYRVTAIGDDDEYEDDPCSQYTFTFYVPDSADPVYVQELILMPPPTNLPWDEEAMNKITQAVVDAREARDEAEAQADRAEVQVDLAKAEVVKAQDEVVKAKAEVTKAQAEVTKAAQQVELAKVEVGKAEASAAAAKVSETNAANAAAGSAASATAATNQANRAKTEADRSKSEADRARDLADAMAEKVEGGSLPPLVGMNETFTYEGTDPYRWTVSGPATAVSDGNVMRLTKTDGSGSRAFVRQAVSFPDSHWIVYMRVKTQTGTASQNRSAQIRFIAADNKDCVVYFNVNANGLVEPNTIHMQGTEGGTRNAATMFTGLGTEDWLDLAVKYDAVSRHSELFRXXSDTGVWQKGGGRLMVDAIKPAFIEVSSMPVAPLNWWLDLDFISVCKPNLICYGDSIAAGQNEYGVTRGSNPYNNNRNWAGTWFGKVPLYATNRNNLVLVQGVEGRRTWQYLSQLSEISNSGVKVVFMHASTNDVNDATMTMAKRTSDTQAIIDQLHAVGAQVVLFNSMQGTKAYNDASSSTVKLRDYTDQWWNTELPNVNGLAQTLDIARLIAKDGYMDPALGASDGLHLTDASAQKIADKLGQFFSNSSDTNGFASLDSPAFTGIPTVPTQTPFLPYGKAIANTEYVVTFIQDWTQRYGYGELTMDSRTGAQLSGAGVRSGYYHVPAGAGNPLPSGLNTTLAFVDHKSYDTNKGWQLWNPAYTGRLFIRTTNSAGTWQTPVELATFTWLDENNVTKPRTLKFMGLPLFNPSGSPTLSGFVPIQDSADGGWRNLSATPTGVALLGASSAGGALSYLGGMPIANQTLPSNSIDNAALNGFYSVPNGTAGLPLGMEGTNGHAGITSVFDNSTKYQLLFPRTGGAGSYATSVFYRARSNNGWESWVRLLASNQLEGSVTTEPLTTAIFQNNGNNNQNVGCSVRFADGTQIVYATIRLTYSAVDVLQYTYTYPMGFVAPPTITVQPILGARAXINDMPYFAVTSPFTYNVGNGNALVQIYRVAGYTGHSFASTSFINCALIAVGRWK
Physico‐chemical
properties
protein length:1091 AA
molecular weight: 117386,48570 Da
isoelectric point:5,07017
aromaticity:0,09467
hydropathy:-0,26820

Domains

Domains [InterPro]
DC_0617
ATT
1–66
DC_0617 DC_2023 IPR036514
Coil
Unmapped
118–187
Coil IPR051532
Coil
Unmapped
216–243
Coil DC_0711
SSF52266
STR
454–652
SSF52266
cd00229
ENZ
457–653
cd00229
IPR013830
ENZ
459–642
IPR013830
QHZ59488.1
1 1091
Architecture
ATT
ATT
STR
ATT 1-66 | ATT 94-412 | STR 413-1090 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QHZ59488.1
1 1091
Domain Start End Length (AA) Confidence
N-terminal 1 256 256 0,9958
Central domain 257 503 248 0,5825
C-terminal 504 1091 587 0,7091
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-256
Central
257-503
C-terminal
504-1091

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage LY218
[NCBI] 		2696354 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QHZ59488.1 [NCBI]
Genbank nucleotide accession
MN906996.1 [NCBI]
CDS location
range 29963 -> 33238
strand -
CDS
ATGACTACCAAGGTGATCTTCACCTTCCATAGCCCGGACGGTAGCCCACAGGCGAACGAGAAGTTCACTGTGCGGCTCACCCGTCCTGGTATGAGCGATGCAGAGCACTGTGTCGTTATTCCCGAAACCTACGAGATGGTGACCGACGCCAAGGGCGAGTTCACCATGGACTTGGAATCGTCTACCTCTGCCTACCGCGTCACTGCTATAGGCGATGACGACGAGTACGAGGACGATCCCTGCTCGCAGTACACCTTCACCTTCTACGTGCCGGACTCTGCTGATCCGGTCTACGTGCAGGAACTGATCCTGATGCCCCCGCCCACGAATCTGCCGTGGGACGAGGAAGCCATGAACAAGATCACCCAAGCGGTGGTCGATGCCCGTGAGGCTCGTGACGAAGCTGAAGCTCAGGCTGACCGTGCTGAAGTGCAGGTAGATCTAGCCAAAGCCGAGGTCGTCAAAGCCCAGGATGAGGTCGTTAAAGCCAAAGCCGAGGTGACCAAGGCTCAGGCTGAAGTGACCAAAGCTGCTCAGCAAGTTGAGCTTGCGAAGGTCGAAGTGGGTAAGGCAGAAGCCTCTGCTGCTGCGGCCAAGGTCAGCGAGACCAATGCTGCGAATGCCGCTGCTGGTTCTGCCGCCTCGGCAACTGCTGCAACCAACCAAGCCAACCGTGCGAAGACGGAAGCTGACCGCTCCAAGAGCGAGGCTGACCGTGCACGGGATCTGGCTGACGCCATGGCTGAAAAAGTCGAGGGTGGTTCGCTGCCTCCGCTGGTAGGCATGAACGAGACCTTCACCTACGAAGGTACTGACCCCTACCGCTGGACTGTCTCCGGCCCTGCTACGGCTGTCTCGGACGGCAACGTCATGCGCTTGACCAAGACCGATGGCAGCGGTTCCCGTGCGTTCGTACGACAGGCAGTGTCCTTCCCGGACAGCCACTGGATCGTCTACATGCGTGTGAAGACCCAGACCGGTACCGCCTCGCAGAACCGTTCTGCCCAGATCCGGTTCATCGCTGCYGACAACAAGGACTGCGTGGTCTACTTCAACGTCAATGCGAATGGCTTGGTRGAACCCAATACCATCCACATGCAGGGCACCGAGGGCGGTACCCGCAACGCTGCAACCATGTTCACTGGTTTGGGAACCGAAGACTGGCTAGACCTTGCTGTGAAGTACGATGCGGTAAGCCGCCACAGCGAACTCTTCCGAYSTVTBTCCGATACGGGTGTCTGGCAGAAGGGTGGTGGTCGTCTGATGGTAGATGCCATCAAGCCTGCTTTCATCGAAGTCTCGTCCATGCCGGTAGCACCTCTGAACTGGTGGCTGGATCTGGACTTCATCTCGGTGTGCAAGCCCAACCTCATCTGCTACGGCGACAGCATCGCCGCAGGCCAGAACGAGTACGGTGTGACTCGTGGCAGCAACCCCTACAACAACAACCGCAACTGGGCTGGTACCTGGTTCGGCAAGGTTCCTCTGTATGCCACGAACCGGAACAACCTCGTGCTTGTGCAGGGCGTGGAAGGTCGTCGTACCTGGCAGTATCTGAGCCAGCTGTCGGAGATCTCCAACTCCGGCGTGAAGGTAGTCTTCATGCATGCCAGCACGAATGACGTGAACGATGCCACCATGACCATGGCCAAGCGTACGTCGGACACCCAAGCCATCATCGACCAGCTTCACGCTGTCGGTGCTCAGGTGGTGCTGTTCAACTCCATGCAGGGTACCAAGGCTTACAACGATGCTTCGTCCAGCACGGTCAAGCTTCGGGACTACACCGACCAGTGGTGGAACACCGAACTGCCCAATGTCAATGGTTTGGCCCAGACCCTGGACATCGCACGTCTCATCGCCAAGGACGGGTACATGGACCCTGCCCTCGGTGCGAGTGATGGCCTGCACCTGACCGATGCCTCGGCACAGAAGATCGCCGACAAGCTTGGCCAGTTCTTCTCCAACTCCAGCGATACCAATGGCTTCGCCTCGTTGGATAGCCCAGCCTTCACTGGTATCCCGACTGTTCCCACTCAGACTCCTTTCCTGCCGTACGGCAAGGCTATCGCCAACACCGAGTACGTGGTCACGTTCATCCAAGACTGGACTCAACGGTACGGCTACGGTGAACTCACCATGGATAGCCGGACTGGTGCTCAGCTGTCTGGCGCAGGTGTACGTAGCGGCTACTACCATGTTCCCGCTGGTGCAGGTAACCCCTTGCCTTCTGGCTTGAACACTACCCTGGCTTTCGTGGACCACAAGTCCTACGACACCAACAAGGGCTGGCAGCTGTGGAACCCGGCTTACACCGGCCGTCTGTTCATCCGTACTACCAACTCCGCTGGCACGTGGCAGACCCCGGTAGAACTGGCTACCTTCACCTGGCTGGACGAGAACAACGTCACCAAGCCACGAACCCTGAAGTTCATGGGACTGCCGCTGTTCAATCCTTCTGGCAGCCCGACTCTATCTGGCTTCGTACCGATTCAGGACAGTGCAGATGGTGGCTGGCGTAACCTGTCTGCCACTCCTACTGGTGTGGCTTTGCTGGGCGCTTCTTCGGCTGGAGGAGCGCTGAGCTACCTTGGCGGTATGCCCATCGCAAACCAGACCCTTCCGAGCAACAGCATCGATAACGCAGCCCTCAACGGCTTCTACTCGGTGCCGAATGGAACTGCTGGTCTTCCGCTGGGCATGGAAGGTACGAACGGCCACGCTGGTATCACTTCGGTCTTCGACAACTCCACGAAGTATCAGCTGCTTTTCCCGCGTACTGGTGGTGCTGGTTCCTACGCTACCTCTGTGTTCTACCGTGCTCGGTCGAACAACGGGTGGGAAAGCTGGGTGCGGTTGTTGGCTTCGAACCAACTGGAGGGTTCGGTAACCACTGAACCGCTGACTACTGCTATATTCCAGAACAACGGCAACAACAACCAGAACGTGGGCTGTTCTGTTCGTTTCGCTGACGGTACTCAGATCGTCTACGCAACGATACGACTCACTTACTCTGCGGTGGATGTGTTGCAGTACACCTACACCTACCCGATGGGGTTCGTAGCACCGCCTACTATCACTGTGCAACCTATACTGGGTGCTCGTGCTGMTATCAACGATATGCCTTACTTCGCTGTGACCAGTCCGTTCACCTACAACGTGGGTAACGGCAATGCTCTCGTGCAGATCTACCGGGTTGCTGGGTATACTGGGCACAGCTTTGCCAGTACTTCATTCATTAACTGCGCACTGATCGCGGTAGGACGGTGGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f160535ddf24d51dc1ed637c44ccbb5c5c197e770682d71d69e95add437b2b9e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7555
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Characterization of Pseudomonas Bacteriophage LY218 Amshaqn,A., Blair,B. and Murdock,C. — — GenBank