Protein

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Genbank accession
YP_009817451.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,67
Protein sequence
MLRVVGTIVPPVEGGVLEHVTMLVQCIKSSVITLENSFSPITCDDTGGYDFTLREGIYRIYIKYSTNTPTISLGTCGVVEGMPEELDLNNLLTNYTPQVPDYIQDLDDKWEDTWQDFINDNNTQHANINNSVSAGDAKVVEDMSVYINEVTGQQGASLREEISAGDAGVYNESRAYTDSLGVQVALDITQVANDVSTVSQQLTAYKDENGNTFDEIDNRITTNENELSSTISAQVESETGAMQLRIEDLITTGNAEISQSISVIEDALGATQAAWQIVATVDDLTSAIGMTNNGVNSEIFMQANALKFVDPSDPTLATDPVFQIENQEVFMRSAFIKELGATTVTTDELTSTNYDSNTGFKLHASGLAEFQNINAKGHINATSGSFPAGLITGEVQADQINTNSFVLNGQSVVQKSVAAGADHTLTSSYVTCASTRINIKERTSATRVAVAFSFTLSAGSSVASNYIDIAIYVDGGTTKVFSIPSTYASSSHFTCGDSGSCTTDYYVFPTSIAVQYLFTTNTDACDVTVKIKVRDTTQSIAAHNIVLMVDSGNYV
Physico‐chemical
properties
protein length:555 AA
molecular weight: 59649,14800 Da
isoelectric point:4,18525
aromaticity:0,07387
hydropathy:-0,10811

Domains

Domains [InterPro]
DC_1904
RBD
62–550
DC_1904
IPR015406
RBD
257–385
IPR015406
YP_009817451.1
1 555
Architecture
RBD
RBD 62-550 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009817451.1
1 555
Domain Start End Length (AA) Confidence
N-terminal 1 388 388 0,9321
Central domain 389 544 157 0,0501
C-terminal 545 555 10 0,9959
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-388
Central
389-544
C-terminal
545-555

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.169.O._10N.261.52.B1
[NCBI] 		1881213 No lineage information
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009817451.1 [NCBI]
Genbank nucleotide accession
NC_048121.1 [NCBI]
CDS location
range 63359 -> 65026
strand -
CDS
ATGTTACGTGTTGTAGGGACAATAGTTCCACCAGTGGAAGGGGGAGTGCTAGAGCATGTGACTATGCTTGTCCAATGTATCAAATCTAGCGTTATCACTCTTGAAAACAGTTTCTCTCCCATTACATGTGATGACACAGGGGGCTATGACTTCACCCTACGTGAAGGTATCTACCGAATCTATATCAAATACTCCACTAACACCCCAACCATTTCCTTGGGTACGTGTGGTGTAGTTGAAGGTATGCCTGAAGAACTTGACCTAAATAATCTCTTAACCAATTACACTCCCCAAGTTCCTGACTATATCCAAGACCTTGATGATAAGTGGGAAGATACTTGGCAAGATTTCATTAATGACAACAATACTCAACATGCCAACATAAATAACTCTGTATCGGCAGGTGACGCTAAAGTTGTTGAAGACATGAGTGTTTACATCAATGAAGTCACAGGACAGCAAGGAGCGTCTCTCAGGGAGGAAATATCAGCAGGTGATGCAGGTGTTTACAATGAGAGCAGAGCGTATACCGATTCATTAGGCGTACAAGTTGCTCTGGATATCACGCAAGTAGCTAATGATGTGTCTACGGTATCTCAACAACTTACAGCATACAAAGATGAGAATGGTAACACCTTTGATGAGATTGATAACCGTATCACTACTAATGAGAATGAGCTTAGTTCTACCATTTCTGCTCAAGTAGAATCAGAGACAGGAGCAATGCAGTTACGCATTGAAGATTTGATTACCACTGGCAATGCCGAAATTTCTCAAAGCATCTCTGTTATTGAAGATGCCCTAGGGGCAACTCAAGCAGCATGGCAAATCGTAGCTACGGTAGATGACCTAACCTCTGCAATTGGTATGACGAATAATGGGGTTAACTCTGAAATCTTCATGCAAGCAAATGCTCTGAAGTTTGTTGACCCTAGTGACCCTACCTTGGCTACTGACCCTGTATTCCAGATTGAGAACCAAGAAGTCTTCATGCGAAGTGCTTTTATCAAGGAGCTTGGGGCAACTACAGTTACGACAGATGAGTTAACCTCTACCAATTATGACAGTAACACAGGTTTCAAACTCCACGCTTCAGGGCTTGCAGAGTTTCAGAACATAAATGCCAAAGGACATATTAATGCTACTAGTGGTAGTTTTCCTGCGGGGTTAATCACAGGGGAGGTGCAGGCAGACCAGATTAACACAAATTCGTTTGTACTTAATGGACAGTCAGTTGTACAAAAGTCGGTAGCAGCAGGGGCAGATCATACCCTTACCTCATCGTATGTGACATGTGCTTCGACACGTATAAATATTAAAGAGAGAACCTCCGCAACACGTGTCGCAGTAGCTTTTTCCTTTACACTTAGTGCAGGGAGTTCTGTTGCGAGCAACTACATAGACATTGCGATATATGTGGACGGGGGAACTACGAAAGTATTTAGTATTCCTTCTACATACGCATCCAGTAGTCACTTTACGTGTGGGGATTCGGGGAGTTGTACTACCGATTACTACGTATTTCCTACGTCTATAGCTGTCCAGTACCTATTTACTACAAATACTGATGCATGTGATGTTACTGTAAAAATTAAAGTAAGGGATACTACCCAAAGTATTGCAGCACATAATATAGTATTAATGGTAGATTCAGGTAACTATGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ca794b4ecd7b1e2750c6c4b30c621f24ce6c51086636a3ef7dc103d4a3b13fba
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6483
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank