Protein

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Genbank accession
YP_009784719.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MALTNLTKPRARWATFQLKKAKSIARSLYDRLTEGGISVRDFGATGDGTTDDTTALQAALDATPENGTLRIPRGSYKISANLTRDLPIRLIGGGYLGTRIIWDEGLWLFGLDFNTGGVFVRGLTVGTNYIRPDGKPDGASLGYGVRVQEGDYSDFTFVDCKFSGLNDGILFVNGASGIQFVKCRFANMHHRYTSNTTGGYGIIFQACQDTLISKCRFDKTINRRGVYLSTTATPLQESRHHQITKCKFFGRTGGSADYPTGYEIHLKIRASSDVVVSGNTFDGGLGGIFGEQSDDHTMGNYPENVTIIGNTFRNFNAHNSDASVITCMNRDAKMRNWTIANNVVKNCACRFMMFSDTDGMTLTGNVVEIVAGENTTYHTFEAISGWGIKNVVMTGNVFINKSTSANFMKLWMNNASAEAIKDMTLQGNVIAVTAYSAMDIRGYSGSVTGIISIGNTVRGYGGGSVWQISTDTTVELVYSGGIGESYSNNDRVVQVVSAVSGTIRLGSTGGTVTVPSSAISVYSDMKRNGTREFVSDTVPTSGDYIVGDIIYRNTPVAGGYVGWICVTAGNPGTWKSYGAIEA
Physico‐chemical
properties
protein length:582 AA
molecular weight: 62736,76800 Da
isoelectric point:8,24294
aromaticity:0,09794
hydropathy:-0,15636

Domains

Domains [InterPro]
IPR012334
STR
17–494
IPR012334
IPR011050
STR
34–368
IPR011050 IPR006626 DC_0276
DC_0685
STR
35–82
DC_0685 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR024535
ENZ
37–95
IPR024535
DC_1683
STR
77–455
DC_1683
YP_009784719.1
1 582
Architecture
STR
RBD
STR 17-494 | RBD 495-582
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009784719.1
1 582
Domain Start End Length (AA) Confidence
N-terminal 1 50 50 0,9562
Central domain 51 512 463 0,9831
C-terminal 513 582 69 0,9231
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-50
Central
51-512
C-terminal
513-582

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vc1
[NCBI] 		1480731 Uroviricota > Caudoviricetes > Drexlerviridae > Jhansiroadvirus gwaliVC1 >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009784719.1 [NCBI]
Genbank nucleotide accession
NC_047746.1 [NCBI]
CDS location
range 22170 -> 23918
strand +
CDS
TTGGCACTGACAAATTTAACTAAGCCTCGTGCTAGGTGGGCTACCTTTCAGCTAAAGAAAGCTAAGTCTATAGCGCGTAGCTTGTATGACCGACTTACCGAAGGTGGTATCTCAGTAAGAGACTTCGGTGCTACTGGTGACGGGACAACGGATGATACTACTGCACTACAGGCCGCATTAGATGCAACACCTGAGAATGGTACACTTCGTATACCTCGCGGCTCATATAAGATATCAGCTAACCTTACTAGAGACCTCCCTATCAGGTTGATAGGTGGTGGCTACTTAGGTACACGTATCATCTGGGATGAAGGTCTATGGTTATTTGGTCTTGATTTCAATACAGGCGGTGTCTTCGTTCGTGGTCTTACTGTAGGAACTAACTACATAAGACCTGATGGTAAACCAGATGGGGCTTCACTTGGTTACGGTGTACGAGTGCAAGAAGGTGACTACTCTGACTTCACGTTTGTAGACTGTAAGTTCTCAGGTCTTAACGATGGTATCTTGTTTGTCAATGGTGCTTCTGGTATCCAATTTGTCAAGTGCCGCTTTGCTAACATGCACCACCGGTACACAAGTAATACTACTGGTGGCTACGGTATCATTTTCCAAGCATGTCAAGATACCCTCATCTCTAAATGTCGATTCGATAAGACAATCAACCGACGAGGTGTATACTTATCAACAACAGCAACTCCGTTGCAGGAGTCTCGTCATCACCAGATTACTAAGTGTAAGTTCTTTGGTCGTACTGGTGGCAGTGCCGATTACCCTACTGGCTACGAGATTCATCTAAAAATACGTGCAAGTTCTGACGTAGTTGTATCAGGTAACACATTTGATGGTGGCCTTGGTGGTATCTTCGGTGAACAGTCAGATGACCACACTATGGGTAATTACCCAGAGAATGTAACTATCATAGGTAACACGTTCAGAAACTTCAATGCTCATAATAGTGATGCCTCTGTTATCACTTGTATGAACAGAGATGCTAAGATGCGTAACTGGACTATAGCCAACAATGTAGTTAAGAACTGTGCGTGTAGATTTATGATGTTCTCTGACACGGACGGTATGACACTCACAGGTAACGTGGTTGAGATTGTAGCTGGTGAAAACACTACGTACCACACATTCGAAGCTATAAGTGGCTGGGGAATCAAGAACGTAGTAATGACTGGCAATGTATTCATCAACAAGTCTACGTCTGCTAACTTTATGAAACTATGGATGAACAACGCATCCGCAGAAGCAATAAAGGATATGACACTACAAGGCAACGTGATAGCAGTTACTGCTTACTCTGCAATGGATATCCGAGGGTACTCAGGCAGCGTTACTGGAATAATCTCTATCGGTAATACTGTGCGTGGCTACGGTGGTGGCTCTGTTTGGCAGATATCTACTGACACTACAGTTGAACTTGTTTACAGTGGTGGTATTGGTGAGTCATATAGTAACAATGACCGAGTAGTTCAAGTAGTATCGGCTGTATCTGGTACTATCCGACTAGGTTCTACTGGTGGTACTGTTACTGTACCTAGTTCAGCAATCTCGGTGTACTCTGATATGAAACGTAATGGTACAAGAGAGTTTGTGTCTGACACAGTACCTACCAGTGGTGATTACATCGTTGGTGACATTATTTACAGAAACACCCCAGTAGCAGGTGGTTACGTAGGATGGATATGTGTAACAGCAGGTAATCCTGGGACTTGGAAGAGCTACGGGGCTATTGAAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
712f8e5e0f886e474c1667d39feaf0b0229d8fd4b6f6a4c8e8295017c31b907b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8136
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome of the phage of Vibrio sp. which is highly homologous to Vibro cyclitrophicus was sequenced and analyzed Li,Z., Xu,Y. and Zhang,J. 2018-01-16 — GenBank