Protein

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Genbank accession
AMQ66607.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,54
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MSEFNSWDFKSPLSPMRFQSQLGKETKRLYGESKNIVRLSLARVVKVNYKYNTVDVVTTLHKDSTSKTPSDNGKYSARLPVSFGGRTPDGKVYGSTTLVTVGSLVLIGFLEGNKDYPIVLNIYGESDNQSQLTRTTYTSGDESNEEIQKELWQLFNLYPSMTYRNVDGHGNQEITFSGKTFLYITDSDQENEYVQDAEFDYEHLPSARYANGDLIEPKSPDSPTLLYVHQGVYGDHRVTFFIKSDGTVRVGSRHLDGEGITYQELNTDGSYNITQKHDTVNPEELSEKFSTMSMDDEGNITLKSLNHSLEIRNDGAFLNGRPLGAVGEQQLRDLERGILDNRTSINVLDGQIELKASRTEVDSLTEIVMEQEASLIVAFNEIATRVSRAEFETLAKGSPNLLHNTSFTDTLIAYGEGTTLQVRQRDVNELEVRRAGGTEKWGVYIGQRFPMYLTKGNKYTLSFEGYFGNISEVNMLYIVTSEGLAQKLPDLQVQESTGLIDDYPKYVTTFTSEETYEDTAYLLFAVDSVESDQFTIRKVQLESGDRATEWYPSYRDFAVVNLYETQIRQLADEISLTARSLERQIDDVNGEIDEAIARINEAELKITPEAIVSTVRSSTAYMDDFLHAREYVDTMIGEVNSSISGISNSLNDLDNFINGAFHDGIISEAEAQAIAKYINMLQNEKSNIDAKYQAIIEKEELFGSMKTSLENAKSAYNTAHNDLINTINNAISDGHVTPEESANVDSAFATYRLRLAILSDMFEEAINWIGSVKAQRAEDNAKNHANGLHQQTQSEIEQLSDQINLRVTEETYNSGIQSARDYAEGLFNPISQDLTELAGSLNDLDEYINGAFHNGVISEAEAKAIAKYINTLDGEKKDIDARYQEIINNPDLPDPVRTELQSAKSGFNTSHTNLISAINTAIADGRTTVEEAIHVDTMFTAYNNTLQNLTRWFEEAANEIGNAKAQRAEQRAKEYTDEELGIVSERVRQAELKITPEAITSTVRSSTEYMNDLGEKVGVNEVISRINQTAEEIQIEANKIRITGDTYIEEGALRWDYSQGGILQLGGVDNQNGVLEVYNSDGELIADLDGDRGGFSKLTIADLEVTENFIAPDVVKEQADDVEYRVRGTQGSDDNAGNTGSWNDALYSLQEAINRLPKIINGNVDIIFSGLYDITENNVIIQGFSGGGTLTIDFRGNTFRGRLRVLSCNVRIVIRDGTVISSNASHPSVIDNESSTYVNVSDIEINGRGNSAGVRTWRNGVSYLANMEVKNVESAYLTQTVGRTYHSNTIGHGSNYGIRATSGGIVHLTGQGPTGGTSNGDVSSTGTALVLGSFSSSSGGGSTPPPPPVTEQTRTWTNSSSGQWRENFGGQWGGASSSNSVYQGKWGQWGLYKGCWFFGTGMRNELQGATIKRVRIRPRRASTGGFSSGVGIVFRMHSHSSRPSGEPNMSNTSHTVNFSRGERKWVTLPSSFHSLFSNGNWYGVGIYTTNTSDSRYAIMEPSIEVEVTYEK
Physico‐chemical
properties
protein length:1511 AA
molecular weight: 167230,20830 Da
isoelectric point:4,78041
aromaticity:0,08471
hydropathy:-0,50496

Domains

Domains [InterPro]
DC_0209
STR
16–416
DC_0209 DC_1272 Coil DC_2111
G3DSA:2.60.120.260
STR
395–544
G3DSA:2.60.120.260 Coil Coil Coil DC_1272
AMQ66607.1
1 1511
Architecture
STR
STR
RBD
STR 16-544 | STR 564-1044 | RBD 1331-1511
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMQ66607.1
1 1511
Domain Start End Length (AA) Confidence
N-terminal 1 415 415 0,7428
Central domain 416 1350 936 0,3247
C-terminal 1351 1511 160 0,7437
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-415
Central
416-1350
C-terminal
1351-1511

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage Shbh1
[NCBI] 		1796992 Uroviricota > Caudoviricetes > Herelleviridae > Shalavirus > Shalavirus Shbh1
Host Bacillus sp.
[NCBI] 		1409 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMQ66607.1 [NCBI]
Genbank nucleotide accession
KU640380 [NCBI]
CDS location
range 81682 -> 86217
strand +
CDS
ATGTCAGAATTTAATTCTTGGGATTTTAAAAGTCCGTTAAGTCCCATGAGGTTCCAATCTCAATTAGGGAAAGAGACTAAAAGATTATACGGAGAAAGTAAGAATATTGTACGCCTATCCTTAGCTAGAGTTGTCAAAGTTAACTATAAGTATAACACCGTAGATGTTGTAACTACCCTTCATAAGGATTCTACATCCAAAACTCCTAGCGATAATGGAAAGTATTCCGCTAGACTCCCTGTATCGTTTGGGGGAAGAACCCCGGACGGTAAAGTATATGGATCTACTACTTTGGTTACTGTAGGATCGCTAGTTCTTATCGGATTCTTAGAAGGAAATAAAGATTATCCAATTGTATTGAATATTTACGGAGAGTCAGATAACCAATCTCAACTTACAAGAACGACATATACAAGCGGAGATGAGTCGAATGAAGAGATACAGAAAGAGCTTTGGCAACTCTTCAATTTATACCCTTCAATGACTTATCGTAACGTGGATGGTCATGGAAATCAAGAAATTACCTTTTCAGGTAAGACGTTCCTCTATATTACTGATTCAGATCAGGAAAACGAGTATGTACAGGATGCTGAGTTTGATTATGAACACCTCCCTAGTGCAAGATATGCAAATGGTGATCTTATCGAACCTAAGTCTCCCGATTCCCCTACTCTTTTATACGTTCATCAGGGAGTGTATGGGGATCATCGTGTCACTTTCTTTATAAAGTCTGATGGTACAGTACGAGTAGGTAGTAGACACCTAGATGGAGAAGGAATTACCTACCAAGAGTTGAATACTGACGGGTCCTATAACATAACACAAAAACACGATACCGTAAATCCAGAAGAGTTATCTGAAAAATTTTCTACCATGTCTATGGATGACGAAGGAAATATCACTTTAAAGTCACTTAACCATAGTTTAGAGATCCGCAATGACGGGGCTTTCTTAAACGGTAGACCTTTAGGGGCTGTAGGAGAGCAACAATTACGTGATTTAGAGAGAGGTATTTTAGATAACCGTACGTCCATCAATGTACTTGATGGGCAGATTGAGCTTAAAGCTAGTCGTACTGAGGTTGATAGCTTAACAGAAATTGTCATGGAGCAAGAGGCATCCCTCATTGTTGCATTCAACGAGATCGCTACAAGAGTGTCAAGAGCCGAGTTTGAGACATTAGCAAAAGGTAGTCCTAACTTATTACACAACACGAGTTTTACAGACACGTTAATTGCGTATGGAGAAGGTACAACTCTACAGGTACGACAGCGAGACGTAAACGAGTTAGAGGTAAGAAGGGCAGGAGGAACTGAAAAGTGGGGGGTATACATCGGTCAGAGATTCCCAATGTATCTAACAAAAGGAAATAAATATACGTTATCTTTTGAAGGTTACTTTGGAAATATTTCGGAAGTAAACATGTTATATATTGTTACTTCCGAAGGACTAGCTCAGAAACTACCTGATTTACAGGTTCAAGAGAGCACAGGACTCATCGATGATTACCCAAAATATGTAACTACTTTTACTAGTGAAGAAACATACGAGGATACTGCTTACTTACTTTTTGCTGTAGATAGCGTAGAGTCAGATCAATTTACAATCCGTAAAGTACAGTTGGAATCCGGTGATCGAGCTACTGAATGGTACCCTAGCTATAGGGACTTTGCAGTTGTTAATCTATATGAGACTCAAATTAGGCAGCTAGCGGATGAAATTTCTTTAACTGCTAGATCCCTTGAGAGGCAGATTGACGATGTTAACGGAGAAATTGATGAAGCTATTGCAAGAATTAATGAAGCAGAGTTAAAAATAACTCCTGAGGCTATTGTTTCTACTGTTCGTTCCAGTACTGCGTATATGGATGATTTCCTTCATGCTAGAGAATATGTGGATACTATGATAGGTGAAGTAAATTCTTCAATAAGCGGTATTAGTAACAGTCTTAACGACTTAGATAATTTCATTAATGGAGCTTTCCATGACGGTATCATTAGTGAAGCAGAGGCTCAAGCAATTGCGAAATACATAAACATGTTGCAGAATGAGAAATCTAATATTGATGCTAAATATCAAGCTATTATTGAAAAAGAAGAGTTATTTGGCTCAATGAAAACTTCCTTAGAGAATGCAAAATCAGCTTATAATACTGCACATAATGACTTAATTAATACAATTAATAATGCAATTTCTGACGGACATGTGACCCCAGAAGAGTCTGCTAATGTGGATTCAGCTTTTGCTACTTACCGTCTTCGATTAGCAATCCTATCTGATATGTTTGAAGAAGCTATAAATTGGATAGGTAGTGTTAAAGCGCAAAGAGCCGAGGATAATGCGAAGAATCATGCTAACGGTCTTCACCAACAAACACAATCTGAGATTGAGCAACTGTCTGATCAAATCAATCTACGAGTCACCGAGGAAACTTACAACTCAGGAATACAGAGTGCTAGAGACTACGCAGAAGGGTTATTTAACCCTATTAGCCAAGACTTAACTGAGTTAGCAGGTTCTTTAAATGATCTGGATGAGTACATCAACGGAGCTTTTCATAACGGAGTCATTAGTGAGGCGGAAGCTAAAGCTATCGCAAAGTATATTAATACCTTAGACGGAGAAAAGAAAGACATCGATGCTCGTTATCAAGAGATTATCAATAACCCTGATCTACCTGATCCTGTCAGGACCGAGTTACAGAGTGCTAAGAGTGGGTTTAATACATCCCACACAAATTTAATTAGCGCTATTAATACTGCGATTGCGGACGGCAGAACCACTGTTGAAGAGGCTATCCATGTGGACACCATGTTTACTGCCTATAACAACACTCTGCAAAACTTAACTCGTTGGTTCGAGGAAGCAGCGAATGAGATCGGTAATGCTAAGGCGCAAAGAGCAGAACAAAGAGCTAAAGAGTACACTGATGAAGAGCTAGGAATAGTAAGTGAGAGAGTAAGACAAGCAGAACTGAAAATTACTCCTGAAGCTATAACTTCTACTGTTCGTTCTAGTACAGAATACATGAACGATTTAGGGGAGAAAGTAGGAGTAAACGAGGTAATATCTAGAATTAACCAAACTGCCGAAGAGATACAAATCGAGGCAAACAAAATACGTATTACAGGAGATACCTATATAGAGGAAGGCGCACTTCGTTGGGACTATTCTCAAGGAGGTATCCTTCAATTAGGTGGCGTAGATAATCAGAACGGAGTTTTAGAAGTTTATAATTCAGATGGAGAACTTATTGCAGATCTTGATGGAGATCGCGGAGGATTCTCTAAATTAACTATTGCAGACTTGGAGGTAACAGAAAACTTTATTGCCCCAGACGTAGTTAAAGAACAGGCAGATGATGTTGAATACCGAGTCCGAGGTACTCAAGGAAGTGACGATAACGCAGGTAACACAGGTAGTTGGAATGACGCTCTATACTCTCTACAAGAAGCTATTAACCGTTTACCCAAAATTATAAATGGTAACGTAGATATTATTTTCTCCGGTCTATACGATATTACGGAAAACAACGTAATCATCCAAGGGTTTTCAGGAGGAGGAACCTTGACTATAGACTTTAGAGGGAATACCTTTAGAGGAAGATTACGAGTTTTAAGCTGTAATGTGCGAATAGTAATTAGAGATGGTACGGTAATTTCCTCTAACGCTAGCCACCCTTCGGTTATTGACAATGAGTCTTCCACTTATGTTAACGTAAGCGATATAGAAATAAATGGTAGAGGCAATAGTGCAGGAGTGCGTACATGGAGGAATGGTGTTTCTTACTTAGCAAATATGGAAGTAAAAAATGTTGAGAGTGCCTATCTTACGCAAACGGTAGGTAGAACTTACCACTCAAATACTATAGGTCACGGTAGCAACTATGGAATACGAGCCACATCTGGAGGTATTGTTCATTTGACTGGTCAAGGACCAACAGGAGGTACTTCTAATGGTGACGTATCGAGCACAGGGACAGCCTTAGTGTTAGGTAGTTTTAGCTCTAGTAGTGGTGGAGGAAGTACTCCACCCCCACCACCAGTAACTGAACAAACCAGAACATGGACCAATTCGTCCTCCGGACAATGGAGAGAGAACTTCGGAGGTCAGTGGGGAGGAGCCTCAAGTAGTAACAGTGTCTACCAAGGTAAATGGGGTCAATGGGGTCTATATAAAGGTTGTTGGTTCTTTGGAACGGGAATGAGAAACGAGCTTCAAGGAGCAACGATTAAAAGGGTTCGTATTCGTCCACGAAGAGCAAGTACTGGAGGTTTTAGTTCTGGTGTAGGTATTGTATTCAGAATGCATAGTCACTCATCAAGACCAAGCGGAGAACCTAATATGTCAAATACTTCTCATACAGTTAATTTCTCACGAGGAGAAAGAAAATGGGTCACGTTGCCTTCATCTTTCCATTCTCTATTCTCTAATGGTAACTGGTATGGAGTAGGTATCTACACGACAAATACGTCCGATTCACGTTATGCTATAATGGAACCCTCTATAGAAGTTGAAGTAACATACGAAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
50f16fd4a5367babdfe9b849a7ca82dadd2458e9ea474198a45750f438e81f9f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7838
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of bacteriophages from East Africa Rift Valley soda lakes van Zyl,L.J., Nemavhulani,S., Cowan,D.A. and Trindade,M.I. 2016-12 — GenBank