Protein

View in Explore
Genbank accession
QDH83809.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,62
Protein sequence
MATLLLIENAFRPDANPRQEPVRAGERISSMLRRIGYLKGRGAKAVRKVPFVVVRNGEPVLIAQMSTRIKAKDHISVIHLPKGGGGGSNPLQMVLTVAIAVAAAYTGGLAATAFSSQLAGAAVSAAVMIGGTLLLSMFFPPQMPSAMSLNREKASPTYSISSQGNQARLMEAIPVLYGRFRTFPDLASAPYTESRGNETYLYQLFCITQGQMDIETIQVENDNVSTYGEIEYQIVNPGQSVTLFPDNVISSPAVNNFELTPPEQPGNIKGPFAVSNPGVQVNYIGIDLYLPGGAYYMNDKGRFDTSRVNVQFEYQAINDAGVPSGNWMPLFSKEYAFATNTPQSISEKIEVPLGRYQVRGYRTTAGPADNREINTVQWAVMRGYAPSVRQYGDVTLLAMIIKATNNINQQTARRINVIGTRKLPVWDPVNGWSVNPVATTNPAWAAADILRNTTYGRRLPTSRINIQELYRLSQVYQSRGDEFNGVFDTTSQLWDALTKVLRVGRTVPINYAGLIDFVRNEPKTVPTYMFQPQNMVENSFSTEYAFAEPGSTPNYVQVEYINRETWVSETVDCVLPGVAPTIPAKVQLMGVTSRAQAWREGMSLAAANRDQRRQISFSTGFEGYLPRFGDLVQISHDVPQWGYSGEVLGLNAGPDSEEYGLQGELTTTEELVFVPGLTHQIAFKKRDGSPHGPFNVVPHPSGLYNKAIVQATVAQLQQIYISDGFREELTQYQFGPTERRGLRAIALSATPDSDGKVLLTFTNYAESVHAAENGGVTPPPGPDSNLPGIVTVPVIDSVKLELTPYAWQQLIVATPARGARLYEYEISQDGLNWSNLGTATSPSMQVNLSGGTWFVRVRAIGNLTGPWTTWTGVVEASTLPASRVDHVSITSVVFGIDLEWAVREDDYLAASVEVYWGTTNVLGNATRLIDMPLPGNKFSVTDLGPGAVRYFWFRAIDEAGRVGPWYNNGVGLMGKSSDQADIIMAYLDGKITETQLAQSLIEKIDSGGGAAVEVEAIQNALAAMYTIKTQLTAGGRTALAGIGVGVENNDGVLESQVLVLADRFAVGRSDDATGTFKSMFIIDNGNVYIDTAFIKNGTITNLMIGDIIQSNDYVAGVSGWRLHKGAQGFEMNGTGNGYRVRLTNTGLYVWNTNTGVLCVEVGLLT
Physico‐chemical
properties
protein length:1165 AA
molecular weight: 126786,85180 Da
isoelectric point:5,44940
aromaticity:0,09185
hydropathy:-0,13519

Domains

Domains [InterPro]
DC_0129
STR
1–1111
DC_0129
NF040662
Unmapped
279–770
NF040662 IPR015406
IPR055385
ATT
280–382
IPR055385 IPR032876 IPR053171
QDH83809.1
1 1165
Architecture
STR
ATT
STR
ATT
STR
RBD
STR 1-279 | ATT 280-382 | STR 383-492 | ATT 493-641 | STR 642-1111 | RBD 1112-1137 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH83809.1
1 1165
Domain Start End Length (AA) Confidence
N-terminal 1 646 646 0,8217
Central domain 647 1108 463 0,0466
C-terminal 1109 1165 56 0,7765
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-646
Central
647-1108
C-terminal
1109-1165

Taxonomy

  Name Taxonomy ID Lineage
Phage Achromobacter phage vB_AxyS_19-32_Axy06
[NCBI] 		2591049 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH83809.1 [NCBI]
Genbank nucleotide accession
MK962627.1 [NCBI]
CDS location
range 20376 -> 23873
strand +
CDS
ATGGCAACCCTGCTGCTGATTGAAAACGCTTTTCGCCCCGACGCGAATCCCCGGCAAGAGCCGGTTCGCGCCGGCGAGCGTATCAGCTCCATGCTGCGCCGTATCGGCTACCTGAAGGGCCGCGGTGCGAAAGCTGTGCGTAAAGTCCCGTTCGTCGTCGTTCGAAACGGCGAACCGGTCCTTATTGCCCAAATGTCTACGCGCATTAAAGCTAAGGACCACATCAGCGTCATCCACCTGCCGAAGGGTGGCGGTGGCGGGAGCAACCCACTTCAAATGGTGTTGACAGTGGCTATTGCTGTCGCGGCTGCCTATACTGGCGGTTTGGCTGCTACGGCTTTCAGCTCCCAATTGGCAGGCGCGGCAGTGTCAGCAGCGGTCATGATCGGCGGCACTTTGCTGCTGAGCATGTTCTTCCCGCCGCAAATGCCGTCAGCTATGTCCTTGAATCGGGAGAAGGCGAGTCCAACGTACTCAATTTCCTCTCAAGGCAACCAGGCCCGACTTATGGAAGCTATCCCGGTCCTGTACGGTCGCTTCCGCACATTCCCTGACCTCGCTTCGGCTCCCTATACCGAGTCGCGAGGCAACGAGACTTACCTGTACCAGCTCTTCTGCATCACGCAAGGGCAAATGGACATCGAGACCATCCAGGTCGAGAACGATAATGTGTCCACGTACGGGGAAATCGAGTACCAGATTGTCAATCCTGGGCAGTCTGTTACTCTGTTCCCGGATAACGTCATCTCCAGCCCGGCCGTCAACAACTTTGAGCTGACGCCGCCGGAGCAGCCTGGCAATATCAAGGGGCCTTTTGCGGTCTCGAATCCTGGCGTACAAGTCAACTACATCGGCATTGACCTGTATCTGCCGGGCGGAGCCTATTACATGAACGACAAGGGGCGGTTTGACACCTCCCGCGTCAACGTGCAATTTGAATACCAGGCAATCAATGACGCCGGCGTTCCGTCCGGCAACTGGATGCCCTTGTTCAGCAAGGAATATGCTTTTGCGACCAATACCCCGCAGAGCATCTCCGAGAAGATCGAGGTTCCGCTAGGCCGCTATCAAGTACGCGGCTACCGTACCACCGCTGGCCCCGCAGATAACCGTGAAATCAATACGGTTCAATGGGCTGTCATGCGGGGCTACGCTCCGTCGGTTCGCCAGTACGGTGATGTGACTTTGCTGGCCATGATTATCAAGGCCACGAACAACATCAACCAGCAAACCGCTCGTCGTATCAACGTGATTGGCACGCGTAAGCTGCCGGTGTGGGACCCTGTCAACGGTTGGTCTGTCAACCCAGTTGCTACGACCAATCCGGCTTGGGCGGCTGCAGACATCCTGCGCAATACGACCTATGGCCGGCGCCTGCCAACTTCCCGCATCAACATTCAAGAGCTGTACCGCCTCTCGCAGGTCTATCAGTCTCGTGGCGACGAGTTCAATGGCGTCTTTGATACCACTTCTCAGCTGTGGGATGCACTGACGAAAGTCTTACGGGTGGGTCGGACTGTTCCGATCAACTACGCGGGCCTCATTGACTTTGTGCGCAACGAGCCCAAGACGGTTCCAACCTACATGTTCCAGCCTCAGAACATGGTGGAGAACTCGTTCAGCACTGAATACGCCTTTGCGGAACCGGGCTCTACTCCGAACTATGTTCAAGTTGAGTATATCAACCGTGAAACTTGGGTGTCTGAGACTGTCGACTGCGTGCTCCCTGGCGTCGCTCCCACGATTCCGGCAAAGGTGCAGCTCATGGGCGTCACTAGCCGTGCTCAAGCATGGCGCGAAGGCATGTCCTTGGCCGCCGCCAACCGCGATCAGCGCCGCCAAATCAGCTTCTCGACAGGCTTTGAGGGCTATTTGCCTCGCTTCGGCGACCTCGTCCAGATTTCTCACGACGTTCCTCAATGGGGGTACTCTGGTGAAGTCTTGGGCTTGAACGCCGGACCGGATAGCGAAGAGTATGGCCTGCAGGGCGAACTGACCACCACGGAAGAGCTGGTATTTGTTCCCGGACTGACCCACCAAATCGCGTTCAAGAAGCGCGATGGGTCGCCGCATGGCCCCTTCAACGTTGTACCGCATCCCTCCGGTCTGTACAACAAGGCCATCGTCCAAGCCACTGTCGCCCAGCTGCAGCAAATCTACATTTCGGACGGTTTTCGGGAGGAGCTGACGCAGTATCAATTCGGTCCTACCGAACGCCGTGGGCTGCGCGCAATCGCGTTGTCGGCTACTCCGGACAGCGACGGAAAAGTGCTGCTGACGTTCACGAACTACGCGGAGAGTGTCCATGCTGCTGAAAACGGGGGTGTTACTCCGCCTCCCGGCCCAGACTCGAATCTCCCGGGTATCGTCACGGTGCCCGTCATCGATTCGGTCAAGCTGGAACTGACCCCGTACGCTTGGCAGCAGCTGATCGTGGCTACGCCTGCTCGTGGTGCCCGCTTGTATGAATATGAGATTAGCCAGGACGGCCTCAATTGGTCCAACCTCGGTACAGCTACGTCTCCTTCGATGCAAGTCAACCTCAGTGGCGGCACCTGGTTTGTCCGAGTGCGTGCTATCGGCAACCTGACTGGCCCTTGGACTACTTGGACGGGTGTCGTTGAGGCGTCTACGCTTCCAGCTTCTCGCGTTGACCACGTTTCCATTACGTCGGTTGTGTTTGGTATCGACCTCGAATGGGCCGTGCGTGAAGACGACTATCTGGCTGCGTCCGTTGAAGTGTACTGGGGAACTACCAACGTGCTCGGCAATGCCACTAGGCTCATTGACATGCCGCTGCCAGGGAATAAATTCTCTGTCACGGACCTCGGGCCTGGTGCTGTTCGATACTTCTGGTTCCGAGCGATTGACGAAGCAGGGCGCGTCGGTCCTTGGTACAACAACGGGGTGGGTCTGATGGGCAAGTCCAGCGATCAAGCGGACATCATCATGGCCTATCTGGATGGCAAGATCACTGAGACCCAACTGGCTCAATCCCTTATCGAGAAGATCGATTCTGGTGGCGGAGCGGCAGTCGAGGTGGAAGCAATCCAAAACGCCTTGGCTGCGATGTACACCATCAAAACGCAGCTGACGGCTGGTGGTCGTACTGCTCTTGCTGGTATCGGTGTTGGTGTCGAAAACAATGACGGCGTGCTAGAATCACAAGTACTTGTGTTGGCAGACCGATTCGCGGTGGGTCGTTCTGATGATGCTACTGGAACTTTCAAGTCCATGTTCATCATCGACAACGGCAACGTGTACATCGACACTGCCTTCATCAAGAACGGTACTATCACAAACCTCATGATCGGGGACATTATCCAGTCCAACGATTATGTTGCAGGGGTATCCGGCTGGCGTCTCCATAAGGGAGCCCAAGGGTTTGAAATGAACGGCACCGGCAACGGTTACCGAGTTCGTCTCACCAACACGGGCTTGTACGTATGGAACACCAACACCGGTGTCCTCTGCGTTGAAGTGGGGCTGCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
85cf3fbc6954090c6a5b96f22c690036f185bdbd6ca4fe18c7779c037c36d86b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2766
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of sixteen phages from Abidjan, cote d'Ivoire, isolated on a single strain of Achromobacter xylosoxidans Essoh,C., Vernadet,J.-P., Vergnaud,G. and Pourcel,C. 2020-01-02 — GenBank