Protein

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Genbank accession
AGH56992.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MPIGAHKILSGGGGGSSVTRETVYDEGNDVRAYISNWNYSETSSMSVSPTPPGYSGGGGYWHGWGGSGRTYQLNVGGLPAHQYLCYDCLIHHVDSWDNEYQHINIDGNRFANWRKVWNENRFRELVGNHDRSVTGGATLLCRCDNNYSYEPWNGSNDGTMCYLRFSSGWIPHTSGSVQVDHRTDLNQSRGDEAYYISHSRIRVVNASELNFGTGASPESAMESGKFGVAYGAVQSSGQYWIQSHSMPNPLQMYVNADEDGGGYDFYPINGSGRNINYHGQYHSGADLGLDMFYGRSKYAWRAAANYATIVNGGNWPNFFVGCGDVYKTGGGGNYTGRIMRSADYGGNNTHDWRVTDGGRWWLRDNTHSEPNGDYSADGYLNMYGGSRNNLKNLSNIGFNDGGAYSIGNYYLLSTNQHNF
Physico‐chemical
properties
protein length:419 AA
molecular weight: 46335,65240 Da
isoelectric point:5,94083
aromaticity:0,13842
hydropathy:-0,73150

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH56992.1
1 419
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,0006
Central domain 85 283 200 0,3124
C-terminal 284 419 135 0,6854
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-283
C-terminal
284-419

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-RSM6
[NCBI] 		929832 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56992.1 [NCBI]
Genbank nucleotide accession
HQ634193 [NCBI]
CDS location
range 162233 -> 163492
strand -
CDS
ATGCCTATTGGAGCCCATAAAATATTATCAGGTGGTGGCGGTGGATCATCCGTTACCAGAGAGACAGTATATGATGAAGGGAATGATGTAAGAGCTTACATAAGTAACTGGAATTATTCTGAAACTTCCTCGATGTCAGTTAGTCCTACACCGCCAGGATATAGTGGTGGTGGTGGATACTGGCATGGTTGGGGTGGTTCAGGACGTACATATCAACTTAATGTAGGTGGACTCCCTGCACATCAATACCTATGTTATGATTGTCTTATTCATCATGTAGACTCATGGGATAATGAGTATCAGCATATTAATATTGATGGTAATAGATTTGCTAACTGGCGTAAGGTCTGGAATGAAAACAGATTCAGAGAATTAGTAGGGAACCATGATAGATCAGTAACAGGTGGTGCAACCCTATTGTGTAGATGTGATAATAACTATAGTTATGAACCATGGAACGGTTCTAATGATGGCACTATGTGTTATCTAAGATTTTCCTCTGGATGGATTCCTCATACATCTGGAAGTGTGCAGGTGGATCATAGAACGGATCTTAACCAGAGTAGAGGAGACGAAGCATATTATATTTCCCATTCTCGTATTAGAGTTGTTAATGCCTCAGAATTAAATTTTGGTACTGGAGCCAGTCCAGAGTCCGCTATGGAATCTGGGAAGTTTGGTGTGGCATATGGTGCTGTACAGTCCAGTGGTCAATACTGGATTCAGTCACACTCCATGCCTAATCCACTTCAGATGTATGTTAATGCTGATGAAGATGGTGGTGGATATGATTTCTATCCTATTAATGGTAGTGGTAGAAACATTAATTATCATGGACAATACCATAGTGGTGCTGACTTAGGACTTGATATGTTCTATGGCAGATCAAAGTATGCATGGAGAGCAGCAGCAAACTATGCTACAATAGTTAATGGTGGCAACTGGCCAAACTTCTTTGTTGGTTGTGGTGATGTCTACAAGACTGGTGGCGGGGGCAACTATACTGGAAGGATCATGAGATCTGCTGATTATGGTGGTAACAATACTCATGACTGGAGAGTTACAGATGGTGGTAGATGGTGGTTAAGAGACAATACACATTCAGAACCCAACGGGGATTACTCTGCTGACGGGTATCTAAATATGTACGGAGGTTCTCGTAACAACCTTAAAAACCTCTCTAACATCGGATTTAATGATGGTGGAGCGTATTCGATAGGTAACTATTATCTCTTATCGACTAATCAACATAATTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
723cba132f90d025682432c97dc7d402d1df46eafe628f9da281ecbabf5ee6c1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4419
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-RSM6 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank